Markus Herrgard

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Citations	13692	5724
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Adam FeistUC San Diego (UCSD) / Technical University of Denmark (DTU)Verified email at ucsd.edu
Rebecca M LennenSenior Researcher, Novo Nordisk Foundation Center for Biosustainability, Technical University ofVerified email at biosustain.dtu.dk
Nikolaus SonnenscheinGinkgo BioworksVerified email at ginkgobioworks.com
Markus CovertStanford UniversityVerified email at stanford.edu
Daniel MachadoNorwegian University of Science and TechnologyVerified email at ntnu.no
Jens NielsenProfessor in Systems Biology, Chalmers University of Technology, SwedenVerified email at chalmers.se
Morten O A SommerProfessor, Technical University of DenmarkVerified email at bio.dtu.dk
William P. InskeepProfessor, Montana State UniversityVerified email at montana.edu
Douglas B RuschIndiana University BloomingtonVerified email at indiana.edu
Zackary J JayMontana State UniversityVerified email at montana.edu
Konstantin SchneiderBASF SEVerified email at basf.com
Irina BorodinaThe Novo Nordisk Foundation Center for Biosustainability, Technical University of DenmarkVerified email at biosustain.dtu.dk
Lasse Ebdrup PedersenThe Technical University of DenmarkVerified email at dtu.dk
Susannah TringeEnvironmental Genomics and Systems Biology, Lawrence Berkeley National LaboratoryVerified email at lbl.gov
Christian LievenNovo Nordisk Foundation Center for BiosustainabilityVerified email at biosustain.dtu.dk
Jay KeaslingProfessor of Chemical & Biomolecular Engineering and of Bioengineering, University of CaliforniaVerified email at lbl.gov
Michael Krogh JensenSenior researcher, Technical University of Denmark; CEO & Co-founder at BiomiaVerified email at biosustain.dtu.dk
Eytan RuppinChief, Cancer Data Science Lab (CDSL), NCI/NIHVerified email at nih.gov
Tomer ShlomiProfessor of Computer Science and Biology, TechnionVerified email at cs.technion.ac.il
Ólafur ÖgmundarsonUniversity of Iceland, Faculty of Food Science and NutritionVerified email at hi.is

Markus Herrgard

CTO, BioInnovation Institute

Verified email at bii.dk - Homepage

Life Science Innovation Synthetic Biology Metabolic Engineering Systems Biology


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Reconstruction of biochemical networks in microorganisms AM Feist, MJ Herrgård, I Thiele, JL Reed, BØ Palsson Nature Reviews Microbiology 7 (2), 129-143, 2009	1092	2009
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox SA Becker, AM Feist, ML Mo, G Hannum, BØ Palsson, MJ Herrgard Nature protocols 2 (3), 727-738, 2007	1056	2007
Integrating high-throughput and computational data elucidates bacterial networks MW Covert, EM Knight, JL Reed, MJ Herrgard, BO Palsson Nature 429 (6987), 92-96, 2004	1028	2004
Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model NC Duarte, MJ Herrgård, BØ Palsson Genome research 14 (7), 1298-1309, 2004	843	2004
Network-based prediction of human tissue-specific metabolism T Shlomi, MN Cabili, MJ Herrgård, BØ Palsson, E Ruppin Nature biotechnology 26 (9), 1003-1010, 2008	748	2008
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology MJ Herrgård, N Swainston, P Dobson, WB Dunn, KY Arga, M Arvas, ... Nature biotechnology 26 (10), 1155-1160, 2008	692	2008
Connecting extracellular metabolomic measurements to intracellular flux states in yeast ML Mo, BØ Palsson, MJ Herrgård BMC systems biology 3, 1-17, 2009	561	2009
Multiplex metabolic pathway engineering using CRISPR/Cas9 in Saccharomyces cerevisiae T Jakočiūnas, I Bonde, M Herrgård, SJ Harrison, M Kristensen, ... Metabolic engineering 28, 213-222, 2015	466	2015
Systematic evaluation of methods for integration of transcriptomic data into constraint-based models of metabolism D Machado, M Herrgård PLoS computational biology 10 (4), e1003580, 2014	450	2014
MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020	381	2020
Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli AM Feist, DC Zielinski, JD Orth, J Schellenberger, MJ Herrgard, ... Metabolic engineering 12 (3), 173-186, 2010	298	2010
Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae MJ Herrgård, BS Lee, V Portnoy, BØ Palsson Genome research 16 (5), 627-635, 2006	296	2006
Building a global alliance of biofoundries N Hillson, M Caddick, Y Cai, JA Carrasco, MW Chang, NC Curach, ... Nature communications 10 (1), 2040, 2019	289	2019
Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function WP Inskeep, DB Rusch, ZJ Jay, MJ Herrgard, MA Kozubal, ... PloS one 5 (3), e9773, 2010	231	2010
Establishing a synthetic pathway for high-level production of 3-hydroxypropionic acid in Saccharomyces cerevisiae via β-alanine I Borodina, KR Kildegaard, NB Jensen, TH Blicher, J Maury, S Sherstyk, ... Metabolic engineering 27, 57-64, 2015	230	2015
Reconstruction of microbial transcriptional regulatory networks MJ Herrgård, MW Covert, BØ Palsson Current opinion in biotechnology 15 (1), 70-77, 2004	204	2004
The YNP metagenome project: environmental parameters responsible for microbial distribution in the Yellowstone geothermal ecosystem WP Inskeep, ZJ Jay, SG Tringe, MJ Herrgård, DB Rusch, ... Frontiers in microbiology 4, 67, 2013	198	2013
Evolution of Escherichia coli to 42 °C and Subsequent Genetic Engineering Reveals Adaptive Mechanisms and Novel Mutations TE Sandberg, M Pedersen, RA LaCroix, A Ebrahim, M Bonde, ... Molecular biology and evolution 31 (10), 2647-2662, 2014	183	2014
Methods and systems to identify operational reaction pathways BO Palsson, MW Covert, M Herrgard US Patent 7,734,420, 2010	182	2010
Addressing environmental sustainability of biochemicals Ó Ögmundarson, MJ Herrgård, J Forster, MZ Hauschild, P Fantke Nature Sustainability 3 (3), 167-174, 2020	168	2020

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