| Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline S Ou, W Su, Y Liao, K Chougule, JRA Agda, AJ Hellinga, CSB Lugo, ... Genome biology 20, 1-18, 2019 | 669 | 2019 |
| Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza JC Stein, Y Yu, D Copetti, DJ Zwickl, L Zhang, C Zhang, K Chougule, ... Nature genetics 50 (2), 285-296, 2018 | 438 | 2018 |
| De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes MB Hufford, AS Seetharam, MR Woodhouse, KM Chougule, S Ou, J Liu, ... Science 373 (6555), 655-662, 2021 | 310 | 2021 |
| Gramene 2018: unifying comparative genomics and pathway resources for plant research MK Tello-Ruiz, S Naithani, JC Stein, P Gupta, M Campbell, A Olson, ... Nucleic acids research 46 (D1), D1181-D1189, 2018 | 158 | 2018 |
| Ensembl Genomes 2022: an expanding genome resource for non-vertebrates AD Yates, J Allen, RM Amode, AG Azov, M Barba, A Becerra, J Bhai, ... Nucleic acids research 50 (D1), D996-D1003, 2022 | 155 | 2022 |
| Gramene 2016: comparative plant genomics and pathway resources MK Tello-Ruiz, J Stein, S Wei, J Preece, A Olson, S Naithani, ... Nucleic acids research 44 (D1), D1133-D1140, 2016 | 143 | 2016 |
| Rapid evolution of protein diversity by de novo origination in Oryza L Zhang, Y Ren, T Yang, G Li, J Chen, AR Gschwend, Y Yu, G Hou, J Zi, ... Nature ecology & evolution 3 (4), 679-690, 2019 | 132 | 2019 |
| Gapless assembly of maize chromosomes using long-read technologies J Liu, AS Seetharam, K Chougule, S Ou, KW Swentowsky, JI Gent, ... Genome Biology 21, 1-17, 2020 | 100 | 2020 |
| Gramene 2021: harnessing the power of comparative genomics and pathways for plant research MK Tello-Ruiz, S Naithani, P Gupta, A Olson, S Wei, J Preece, Y Jiao, ... Nucleic Acids Research 49 (D1), D1452-D1463, 2021 | 92 | 2021 |
| Gramene database: navigating plant comparative genomics resources P Gupta, S Naithani, MK Tello-Ruiz, K Chougule, P D’Eustachio, ... Current plant biology 7, 10-15, 2016 | 59 | 2016 |
| Effect of sequence depth and length in long-read assembly of the maize inbred NC358 S Ou, J Liu, KM Chougule, A Fungtammasan, AS Seetharam, JC Stein, ... Nature communications 11 (1), 2288, 2020 | 55 | 2020 |
| Genotyping by sequencing of rice interspecific backcross inbred lines identifies QTLs for grain weight and grain length D Bhatia, RA Wing, Y Yu, K Chougule, D Kudrna, S Lee, A Rang, K Singh Euphytica 214, 1-16, 2018 | 38 | 2018 |
| Variant phasing and haplotypic expression from long-read sequencing in maize B Wang, E Tseng, P Baybayan, K Eng, M Regulski, Y Jiao, L Wang, ... Communications Biology 3 (1), 78, 2020 | 28 | 2020 |
| Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice Y Zhou, Z Yu, D Chebotarov, K Chougule, Z Lu, LF Rivera, N Kathiresan, ... Nature Communications 14 (1), 1567, 2023 | 17 | 2023 |
| SorghumBase: a web-based portal for sorghum genetic information and community advancement N Gladman, A Olson, S Wei, K Chougule, Z Lu, M Tello-Ruiz, I Meijs, ... Planta 255 (2), 35, 2022 | 16 | 2022 |
| Pan-genome analysis in sorghum highlights the extent of genomic variation and sugarcane aphid resistance genes B Wang, Y Jiao, K Chougule, A Olson, J Huang, V Llaca, K Fengler, X Wei, ... BioRxiv, 2021.01. 03.424980, 2021 | 15 | 2021 |
| Era of gapless plant genomes: innovations in sequencing and mapping technologies revolutionize genomics and breeding N Gladman, S Goodwin, K Chougule, WR McCombie, D Ware Current opinion in biotechnology 79, 102886, 2023 | 14 | 2023 |
| Benchmarking transposable element annotation methods for creation of a streamlined S Ou, W Su, Y Liao, K Chougule, D Ware, T Peterson, N Jiang, CN Hirsch, ... Comprehensive Pipeline. bioRxiv 657890, 2019 | 12 | 2019 |
| Double triage to identify poorly annotated genes in maize: The missing link in community curation MK Tello-Ruiz, CF Marco, FM Hsu, RS Khangura, P Qiao, S Sapkota, ... PLoS One 14 (10), e0224086, 2019 | 9 | 2019 |
| Sorghum root epigenetic landscape during limiting phosphorus conditions N Gladman, B Hufnagel, M Regulski, Z Liu, X Wang, K Chougule, ... Plant Direct 6 (5), e393, 2022 | 8 | 2022 |
