Thomas J. Sharpton

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Christopher GaulkeAssistant professor, Department of Pathobiology, University of Illinois Urbana ChampaignVerified email at onid.oregonstate.edu
Katherine S PollardDirector, Gladstone Institute of Data Science & Biotechnology / UCSFVerified email at gladstone.ucsf.edu
Keaton Stagaman23andMe, IncVerified email at 23andme.com
Steven W. KembelUniversité du Québec à Montréal (UQAM)Verified email at uqam.ca
James O'DwyerAssociate Professor, Plant Biology, University of Illinois at Urbana-ChampaignVerified email at illinois.edu
Holly K ArnoldDepartment of Biomedical Sciences, Carlson College of Veterinary Medicine, Oregon State UniversityVerified email at oregonstate.edu
Natalia ShulzhenkoAssociate Professor, Vet Med, Oregon State UniversityVerified email at oregonstate.edu
Mariel M FinucaneMathematica Policy ResearchVerified email at mathematica-mpr.com
Robyn L. Tanguay (Formerly Robert L....Oregon State UniversityVerified email at oregonstate.edu
Niklaus J. GrünwaldUSDA ARS, Horticultural Crops Research LaboratoryVerified email at usda.gov
John W. TaylorProfessor, University of California, BerkeleyVerified email at berkeley.edu
Jessica L. GreenPhylagen, Inc.Verified email at phylagen.com
Joshua LadauUniversity of California, San FranciscoVerified email at ucsf.edu
Guillaume Jospinbioinformatician at AnimalBiomeVerified email at animalbiome.com
Rebecca Vega ThurberDistinguished Professor of Microbiology Oregon State UniversityVerified email at oregonstate.edu
Daniel E. NeafseyHarvard TH Chan School of Public Health; Broad InstituteVerified email at broadinstitute.org
Timothy LaurentInvitaeVerified email at gladstone.ucsf.edu
Jonathan A. EisenProfessor, University of California, Davis (UC Davis), Department of Evolution and EcologyVerified email at ucdavis.edu
Zachary S.L. FosterUSDA ARSVerified email at oregonstate.edu
Jérôme P PayetTwist BioscienceVerified email at twistbioscience.com

Thomas J. Sharpton

Professor, Oregon State University

Verified email at oregonstate.edu - Homepage

Gut Microbiome Systems Biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Structure, function and diversity of the healthy human microbiome nature 486 (7402), 207-214, 2012	10528	2012
A framework for human microbiome research nature 486 (7402), 215-221, 2012	2451	2012
An introduction to the analysis of shotgun metagenomic data TJ Sharpton Frontiers in plant science 5, 209, 2014	747	2014
Metacoder: An R package for visualization and manipulation of community taxonomic diversity data ZSL Foster, TJ Sharpton, NJ Grünwald PLoS computational biology 13 (2), e1005404, 2017	643	2017
Structure, function and diversity of the healthy human microbiome HMP Consortium nature 486 (7402), 207-214, 2012	642	2012
A taxonomic signature of obesity in the microbiome? Getting to the guts of the matter MM Finucane, TJ Sharpton, TJ Laurent, KS Pollard PloS one 9 (1), e84689, 2014	372	2014
Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives TJ Sharpton, JE Stajich, SD Rounsley, MJ Gardner, JR Wortman, ... Genome research 19 (10), 1722-1731, 2009	358	2009
Preserving accuracy in GenBank MI Bidartondo Science 319 (5870), 1616-1616, 2008	272	2008
Reporting guidelines for human microbiome research: the STORMS checklist C Mirzayi, A Renson, Genomic Standards Consortium, ... Nature medicine 27 (11), 1885-1892, 2021	247	2021
Global marine bacterial diversity peaks at high latitudes in winter J Ladau, TJ Sharpton, MM Finucane, G Jospin, SW Kembel, J O’dwyer, ... The ISME journal 7 (9), 1669-1677, 2013	221	2013
The influence of ethnicity and geography on human gut microbiome composition CA Gaulke, TJ Sharpton Nature medicine 24 (10), 1495-1496, 2018	214	2018
Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control DE Neafsey, BM Barker, TJ Sharpton, JE Stajich, DJ Park, E Whiston, ... Genome research 20 (7), 938-946, 2010	212	2010
Profile hidden Markov models for the detection of viruses within metagenomic sequence data P Skewes-Cox, TJ Sharpton, KS Pollard, JL DeRisi PloS one 9 (8), e105067, 2014	189	2014
Microbiome multi-omics network analysis: statistical considerations, limitations, and opportunities D Jiang, CR Armour, C Hu, M Mei, C Tian, TJ Sharpton, Y Jiang Frontiers in genetics 10, 995, 2019	156	2019
Triclosan exposure is associated with rapid restructuring of the microbiome in adult zebrafish CA Gaulke, CL Barton, S Proffitt, RL Tanguay, TJ Sharpton PloS one 11 (5), e0154632, 2016	142	2016
Novel bacterial taxa in the human microbiome KM Wylie, RM Truty, TJ Sharpton, KA Mihindukulasuriya, Y Zhou, H Gao, ... PloS one 7 (6), e35294, 2012	130	2012
Transkingdom interactions between Lactobacilli and hepatic mitochondria attenuate western diet-induced diabetes RR Rodrigues, M Gurung, Z Li, M García-Jaramillo, R Greer, C Gaulke, ... Nature communications 12 (1), 101, 2021	117	2021
PhylOTU: a high-throughput procedure quantifies microbial community diversity and resolves novel taxa from metagenomic data TJ Sharpton, SJ Riesenfeld, SW Kembel, J Ladau, JP O'Dwyer, JL Green, ... PLoS computational biology 7 (1), e1001061, 2011	117	2011
A metagenomic meta-analysis reveals functional signatures of health and disease in the human gut microbiome CR Armour, S Nayfach, KS Pollard, TJ Sharpton MSystems 4 (4), 10.1128/msystems. 00332-18, 2019	109	2019
Aging and serum MCP-1 are associated with gut microbiome composition in a murine model MN Conley, CP Wong, KM Duyck, N Hord, E Ho, TJ Sharpton PeerJ 4, e1854, 2016	105	2016

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