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Shawn T O'Neil
Shawn T O'Neil
Assistant Professor of Research, University of Colorado Anschutz
Verified email at cgrb.oregonstate.edu - Homepage
Title
Cited by
Cited by
Year
The National COVID Cohort Collaborative (N3C): rationale, design, infrastructure, and deployment
MA Haendel, CG Chute, TD Bennett, DA Eichmann, J Guinney, WA Kibbe, ...
Journal of the American Medical Informatics Association 28 (3), 427-443, 2021
4182021
Assessing De Novo transcriptome assembly metrics for consistency and utility
ST O’Neil, SJ Emrich
BMC genomics 14, 1-12, 2013
1482013
Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon
ST O'Neil, JDK Dzurisin, RD Carmichael, NF Lobo, SJ Emrich, ...
BMC genomics 11, 1-15, 2010
1452010
A comparative study of ripening among berries of the grape cluster reveals an altered transcriptional programme and enhanced ripening rate in delayed berries
S Gouthu, ST O’Neil, Y Di, M Ansarolia, M Megraw, LG Deluc
Journal of Experimental Botany 65 (20), 5889-5902, 2014
592014
Association of early aspirin use with in-hospital mortality in patients with moderate COVID-19
JH Chow, A Rahnavard, M Gomberg-Maitland, R Chatterjee, P Patodi, ...
JAMA network open 5 (3), e223890-e223890, 2022
482022
Patterns of divergence across the geographic and genomic landscape of a butterfly hybrid zone associated with a climatic gradient
SF Ryan, MC Fontaine, JM Scriber, ME Pfrender, ST O'Neil, JJ Hellmann
Molecular ecology 26 (18), 4725-4742, 2017
302017
Newsvendor problems with demand shocks and unknown demand distributions
S O'Neil, X Zhao, D Sun, JC Wei
Decision Sciences 47 (1), 125-156, 2016
292016
Post-recovery COVID-19 and incident heart failure in the National COVID Cohort Collaborative (N3C) study
HM Salah, M Fudim, ST O’Neil, A Manna, CG Chute, MC Caughey
Nature communications 13 (1), 4117, 2022
282022
Gene expression in closely related species mirrors local adaptation: consequences for responses to a warming world
ST O'Neil, JDK Dzurisin, CM Williams, NF Lobo, JK Higgins, JM Deines, ...
Molecular ecology 23 (11), 2686-2698, 2014
272014
Haplotype and minimum-chimerism consensus determination using short sequence data
ST O'Neil, SJ Emrich
BMC genomics 13, 1-12, 2012
262012
Two Theobroma cacao genotypes with contrasting pathogen tolerance show aberrant transcriptional and ROS responses after salicylic acid treatment
AS Fister, ST O’Neil, Z Shi, Y Zhang, BM Tyler, MJ Guiltinan, ...
Journal of experimental botany 66 (20), 6245-6258, 2015
242015
The characterization of the Phlebotomus papatasi transcriptome
J Abrudan, M Ramalho‐Ortig„o, S O'Neil, G Stayback, M Wadsworth, ...
Insect molecular biology 22 (2), 211-232, 2013
232013
Risk for stillbirth among pregnant individuals with SARS-CoV-2 infection varied by gestational age
T Lyu, C Liang, J Liu, P Hung, J Zhang, B Campbell, N Ghumman, ...
American journal of obstetrics and gynecology 229 (3), 288. e1-288. e13, 2023
112023
Robust haplotype reconstruction of eukaryotic read data with Hapler
ST O'Neil, SJ Emrich
2011 IEEE 1st International Conference on Computational Advances in Bio and†…, 2011
92011
A k-mer based transcriptomics approach for antisense drug discovery targeting the Ewing’s family of tumors
AJ Annalora, S O’Neil, JD Bushman, JE Summerton, CB Marcus, ...
Oncotarget 9 (55), 30568, 2018
72018
Comparing online learning algorithms to stochastic approaches for the multi-period newsvendor problem
S O'Neil, A Chaudhary
2008 Proceedings of the Tenth Workshop on Algorithm Engineering and†…, 2008
72008
Accurate transcription start sites enable mining for the cis-regulatory determinants of tissue specific gene expression
M Ansariola, VN Fraser, SA Filichkin, MG Ivanchenko, ZA Bright, ...
BioRxiv, 2020.09. 01.278424, 2020
32020
A Primer for Computational Biology
ST O'Neil
Oregon State University Press, 2017
32017
Implementing Persistent O (1) Stacks and Queues in R
ST O’Neil
R JOURNAL 7 (1), 118-126, 2015
32015
Hormone replacement therapy and COVID-19 outcomes in solid organ transplant recipients compared with the general population
AJ Vinson, A Anzalone, M Schissel, R Dai, ET French, AL Olex, ...
American journal of transplantation 23 (7), 1035-1047, 2023
12023
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