| GOATOOLS: A Python library for Gene Ontology analyses DV Klopfenstein, L Zhang, BS Pedersen, F Ramírez, A Warwick Vesztrocy, ... Scientific reports 8 (1), 1-17, 2018 | 857 | 2018 |
| The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20, 1-23, 2019 | 385 | 2019 |
| The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces AM Altenhoff, NM Glover, CM Train, K Kaleb, A Warwick Vesztrocy, ... Nucleic acids research 46 (D1), D477-D485, 2018 | 242 | 2018 |
| OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more AM Altenhoff, CM Train, KJ Gilbert, I Mediratta, T Mendes de Farias, D Moi, ... Nucleic acids research 49 (D1), D373-D379, 2021 | 176 | 2021 |
| OMA standalone: orthology inference among public and custom genomes and transcriptomes AM Altenhoff, J Levy, M Zarowiecki, B Tomiczek, AW Vesztrocy, ... Genome research 29 (7), 1152-1163, 2019 | 135 | 2019 |
| Expanding the Orthologous Matrix (OMA) programmatic interfaces: REST API and the OmaDB packages for R and Python K Kaleb, AW Vesztrocy, A Altenhoff, C Dessimoz F1000Research 8, 2019 | 17 | 2019 |
| OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA Ecosystem AM Altenhoff, A Warwick Vesztrocy, C Bernard, CM Train, ... Nucleic Acids Research 52 (D1), D513-D521, 2024 | 15 | 2024 |
| Benchmarking gene ontology function predictions using negative annotations A Warwick Vesztrocy, C Dessimoz Bioinformatics 36 (Supplement_1), i210-i218, 2020 | 14 | 2020 |
| GOATOOLS: a Python library for gene ontology analyses. Sci Rep. 2018; 8: 10872 DV Klopfenstein, L Zhang, BS Pedersen, F Ramírez, A Warwick Vesztrocy, ... | 13 | |
| GOATOOLS: A Python library for Gene Ontology analyses. Sci rep. 2018; 8 (1): 10872 DV Klopfenstein, L Zhang, BS Pedersen, F Ramirez, A Warwick Vesztrocy, ... | 12 | 2021 |
| A gene ontology tutorial in python AW Vesztrocy, C Dessimoz The Gene Ontology Handbook, 221-229, 2017 | 11 | 2017 |
| Prioritising candidate genes causing QTL using hierarchical orthologous groups A Warwick Vesztrocy, C Dessimoz, H Redestig Bioinformatics 34 (17), i612-i619, 2018 | 10 | 2018 |
| New genome assembly of the barn owl (Tyto alba alba) AL Ducrest, S Neuenschwander, E Schmid‐Siegert, M Pagni, C Train, ... Ecology and evolution 10 (5), 2284-2298, 2020 | 9 | 2020 |
| OMAmer: tree-driven and alignment-free protein assignment to subfamilies outperforms closest sequence approaches V Rossier, A Warwick Vesztrocy, M Robinson-Rechavi, C Dessimoz Bioinformatics 37 (18), 2866-2873, 2021 | 7 | 2021 |
| Quality assessment of gene repertoire annotations with OMArk Y Nevers, A Warwick Vesztrocy, V Rossier, CM Train, A Altenhoff, ... Nature Biotechnology, 1-10, 2024 | 6 | 2024 |
| GOATOOLS: A Python library for Gene Ontology analyses., 2018, 8 DV Klopfenstein, L Zhang, BS Pedersen, F Ramírez, AW Vesztrocy, ... DOI: https://doi. org/10.1038/s41598-018-28948-z, 10872, 0 | 6 | |
| Expanding the Orthologous Matrix (OMA) programmatic interfaces: REST API and the OmaDB packages for R and Python [version 2; peer review: 2 approved]. F1000Res. 2019; 8: 42 K Kaleb, AW Vesztrocy, A Altenhoff PubMed Abstract| Publisher Full Text| Free Full Text, 0 | 4 | |
| Application-based fault tolerance techniques for sparse matrix solvers S McIntosh–Smith, R Hunt, J Price, AW Vesztrocy The International Journal of High Performance Computing Applications …, 2017 | 3 | 2017 |
| Will Dampier, Christophe Dessimoz, Patrick Flick, and Haibao Tang. GOA-TOOLS: A Python library for Gene Ontology analyses DV Klopfenstein, L Zhang, BS Pedersen, F Ramírez, AW Vesztrocy, ... Scientific Reports 8 (1), 10872, 0 | 2 | |
| Corrigendum: OMA standalone: orthology inference among public and custom genomes and transcriptomes AM Altenhoff, J Levy, M Zarowiecki, B Tomiczek, AW Vesztrocy, ... Genome Research 30 (6), 9382, 2020 | 1 | 2020 |
