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Judith E Risse
Judith E Risse
Bioinformatics, Wageningen University
Verified email at wur.nl
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Cited by
Cited by
Year
IntAct—open source resource for molecular interaction data
S Kerrien, Y Alam-Faruque, B Aranda, I Bancarz, A Bridge, C Derow, ...
Nucleic acids research 35 (suppl_1), D561-D565, 2007
9392007
A supergene determines highly divergent male reproductive morphs in the ruff
C Küpper, M Stocks, JE Risse, N dos Remedios, LL Farrell, SB McRae, ...
Nature genetics 48 (1), 79-83, 2016
4712016
poRe: an R package for the visualization and analysis of nanopore sequencing data
M Watson, M Thomson, J Risse, R Talbot, J Santoyo-Lopez, K Gharbi, ...
Bioinformatics 31 (1), 114-115, 2015
1042015
A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data
J Risse, M Thomson, S Patrick, G Blakely, G Koutsovoulos, M Blaxter, ...
Gigascience 4 (1), s13742-015-0101-6, 2015
802015
The long reads ahead: de novo genome assembly using the MinION
C de Lannoy, D de Ridder, J Risse
F1000Research 6, 2017
752017
Field cricket genome reveals the footprint of recent, abrupt adaptation in the wild
S Pascoal, JE Risse, X Zhang, M Blaxter, T Cezard, RJ Challis, K Gharbi, ...
Evolution letters 4 (1), 19-33, 2020
302020
Opposing patterns of intraspecific and interspecific differentiation in sex chromosomes and autosomes
PA Moran, S Pascoal, T Cezard, JE Risse, MG Ritchie, NW Bailey
Molecular ecology 27 (19), 3905-3924, 2018
192018
Genomic signatures of historical allopatry and ecological divergence in an island lizard
RP Brown, S Paterson, J Risse
Genome Biology and Evolution 8 (11), 3618-3626, 2016
162016
Genetic mechanisms underlying increased microalgal thermotolerance, maximal growth rate, and yield on light following adaptive laboratory evolution
R Barten, DJM Van Workum, E de Bakker, J Risse, M Kleisman, ...
BMC biology 20 (1), 242, 2022
102022
Profiling of MicroRNAs in the Biofluids of Livestock Species
J Ioannidis, J Risse, FX Donadeu
MicroRNA Protocols, 65-77, 2018
62018
Phylogenomic analysis provides insights into MADS-box and TCP gene diversification and floral development of the Asteraceae, supported by de novo genome and transcriptome …
W Xiong, J Risse, L Berke, T Zhao, H Van De Geest, C Oplaat, ...
Frontiers in Plant Science 14, 1198909, 2023
32023
poreTally: run and publish de novo nanopore assembler benchmarks
C De Lannoy, J Risse, D De Ridder
Bioinformatics 35 (15), 2663-2664, 2019
32019
Transcriptional regulation underlying the temperature response of embryonic development rate in the winter moth
NE van Dis, JE Risse, AS Pijl, RA Hut, ME Visser, B Wertheim
Molecular Ecology 31 (22), 5795-5812, 2022
22022
Catching shufflons in the act: Using nanopore reads to study Bacteroides fragilis
J Risse, M Thomson, M Watson, G Blakely, M Blaxter
F1000Research 4, 2015
2*2015
A Comparison of Database Systems for XML-Type Data
JE Risse, JAM Leunissen
In silico biology 10 (3, 4), 193-205, 2010
22010
Cap-snatching as a possible contributor to photosynthesis shut-off
M Xu, J Risse, R Kormelink
Journal of General Virology 103 (8), 001763, 2022
12022
Text mining for metabolic reaction extraction from scientific literature
JE Risse
Wageningen University, 2014
12014
Winter moth (Operophtera brumata) adaptation to climate change: plasticity in embryonic response to temperature.
NE van Dis, JE Risse, M van der Zee, A Pijl, RA Hut, ME Visser, ...
2022
Genomic basis of rapid adaptation to climate change in the winter moth
NE van Dis, JE Risse, A Pijl, RA Hut, ME Visser, B Wertheim
Netherlands Society for Evolutionary Biology Meeting 2022, 2022
2022
SBfI RADseq of Teleogryllus oceanicus F3 cross between Daintree and Kailua flat-wing crickets
S Pascoal, J Risse, X Zhang, M Blaxter, T Cezard, K Gharbi, J Hunt, ...
Wageningen University, 2019
2019
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