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Candice Hirsch
Candice Hirsch
Verified email at umn.edu
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Year
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
S Ou, W Su, Y Liao, K Chougule, JRA Agda, AJ Hellinga, CSB Lugo, ...
Genome biology 20, 1-18, 2019
7152019
Genome‐wide atlas of transcription during maize development
RS Sekhon, H Lin, KL Childs, CN Hansey, CR Buell, N De Leon, ...
The Plant Journal 66 (4), 553-563, 2011
6062011
Insights into the maize pan-genome and pan-transcriptome
CN Hirsch, JM Foerster, JM Johnson, RS Sekhon, G Muttoni, ...
The Plant Cell 26 (1), 121-135, 2014
5412014
Transposable elements contribute to activation of maize genes in response to abiotic stress
I Makarevitch, AJ Waters, PT West, M Stitzer, CN Hirsch, J Ross-Ibarra, ...
PLoS genetics 11 (1), e1004915, 2015
4362015
An expanded maize gene expression atlas based on RNA sequencing and its use to explore root development
SC Stelpflug, RS Sekhon, B Vaillancourt, CN Hirsch, CR Buell, N de Leon, ...
The plant genome 9 (1), plantgenome2015.04.0025, 2016
3392016
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes
MB Hufford, AS Seetharam, MR Woodhouse, KM Chougule, S Ou, J Liu, ...
Science 373 (6555), 655-662, 2021
3252021
Single nucleotide polymorphism discovery in elite North American potato germplasm
JP Hamilton, CN Hansey, BR Whitty, K Stoffel, AN Massa, A Van Deynze, ...
BMC genomics 12, 1-12, 2011
2532011
Integration of two diploid potato linkage maps with the potato genome sequence
KJ Felcher, JJ Coombs, AN Massa, CN Hansey, JP Hamilton, RE Veilleux, ...
PloS one 7 (4), e36347, 2012
2432012
Marker density and read depth for genotyping populations using genotyping-by-sequencing
TM Beissinger, CN Hirsch, RS Sekhon, JM Foerster, JM Johnson, ...
Genetics 193 (4), 1073-1081, 2013
2262013
Retrospective View of North American Potato (Solanum tuberosum L.) Breeding in the 20th and 21st Centuries
CN Hirsch, CD Hirsch, K Felcher, J Coombs, D Zarka, A Van Deynze, ...
G3: Genes, Genomes, Genetics 3 (6), 1003-1013, 2013
2202013
RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome
Q Li, JI Gent, G Zynda, J Song, I Makarevitch, CD Hirsch, CN Hirsch, ...
Proceedings of the National Academy of Sciences 112 (47), 14728-14733, 2015
2112015
Draft assembly of elite inbred line PH207 provides insights into genomic and transcriptome diversity in maize
CN Hirsch, CD Hirsch, AB Brohammer, MJ Bowman, I Soifer, O Barad, ...
The Plant Cell 28 (11), 2700-2714, 2016
1952016
Maize (Zea mays L.) genome diversity as revealed by RNA-sequencing
CN Hansey, B Vaillancourt, RS Sekhon, N De Leon, SM Kaeppler, ...
PloS one 7 (3), e33071, 2012
1882012
Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays
RS Sekhon, R Briskine, CN Hirsch, CL Myers, NM Springer, CR Buell, ...
PloS one 8 (4), e61005, 2013
1792013
How the pan-genome is changing crop genomics and improvement
R Della Coletta, Y Qiu, S Ou, MB Hufford, CN Hirsch
Genome biology 22, 1-19, 2021
1752021
Utility of RNA sequencing for analysis of maize reproductive transcriptomes
RM Davidson, CN Hansey, M Gowda, KL Childs, H Lin, B Vaillancourt, ...
The Plant Genome 4 (3), 2011
1542011
The effect of artificial selection on phenotypic plasticity in maize
JL Gage, D Jarquin, C Romay, A Lorenz, ES Buckler, S Kaeppler, ...
Nature communications 8 (1), 1348, 2017
1282017
Genetic diversity of a maize association population with restricted phenology
CN Hansey, JM Johnson, RS Sekhon, SM Kaeppler, N De Leon
Crop Science 51 (2), 704-715, 2011
1212011
Spud DB: A resource for mining sequences, genotypes, and phenotypes to accelerate potato breeding
CD Hirsch, JP Hamilton, KL Childs, J Cepela, E Crisovan, B Vaillancourt, ...
The Plant Genome 7 (1), plantgenome2013.12.0042, 2014
1192014
Natural variation for gene expression responses to abiotic stress in maize
AJ Waters, I Makarevitch, J Noshay, LT Burghardt, CN Hirsch, CD Hirsch, ...
The Plant Journal 89 (4), 706-717, 2017
1152017
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Articles 1–20