| Genetic diversity loss in the Anthropocene M Exposito-Alonso, TR Booker, L Czech, L Gillespie, S Hateley, ... Science 377 (6613), 1431-1435, 2022 | 142 | 2022 |
| Identifying cryptic diversity with predictive phylogeography A Espíndola, M Ruffley, ML Smith, BC Carstens, DC Tank, J Sullivan Proceedings of the Royal Society B: Biological Sciences 283 (1841), 20161529, 2016 | 63 | 2016 |
| Demographic model selection using random forests and the site frequency spectrum ML Smith, M Ruffley, A Espíndola, DC Tank, J Sullivan, BC Carstens Molecular Ecology 26 (17), 4562-4573, 2017 | 61 | 2017 |
| Unifying macroecology and macroevolution to answer fundamental questions about biodiversity BJ McGill, JM Chase, J Hortal, I Overcast, AJ Rominger, J Rosindell, ... Global Ecology and Biogeography 28 (12), 1925-1936, 2019 | 57 | 2019 |
| A unified model of species abundance, genetic diversity, and functional diversity reveals the mechanisms structuring ecological communities I Overcast, M Ruffley, J Rosindell, L Harmon, PAV Borges, BC Emerson, ... Molecular Ecology Resources 21 (8), 2782-2800, 2021 | 33 | 2021 |
| Identifying models of trait‐mediated community assembly using random forests and approximate Bayesian computation M Ruffley, K Peterson, B Week, DC Tank, LJ Harmon Ecology and Evolution 9 (23), 13218-13230, 2019 | 18 | 2019 |
| Integrating life history traits into predictive phylogeography J Sullivan, ML Smith, A Espíndola, M Ruffley, A Rankin, D Tank, ... Molecular ecology 28 (8), 2062-2073, 2019 | 17 | 2019 |
| Combining allele frequency and tree‐based approaches improves phylogeographic inference from natural history collections M Ruffley, ML Smith, A Espíndola, BC Carstens, J Sullivan, DC Tank Molecular ecology 27 (4), 1012-1024, 2018 | 15 | 2018 |
| Testing for the presence of cryptic diversity in tail-dropper slugs (Prophysaon) using molecular data ML Smith, M Ruffley, AM Rankin, A Espíndola, DC Tank, J Sullivan, ... Biological Journal of the Linnean Society 124 (3), 518-532, 2018 | 14 | 2018 |
| From coral reefs to Joshua trees: What ecological interactions teach us about the adaptive capacity of biodiversity in the Anthropocene KM Lagerstrom, S Vance, BH Cornwell, M Ruffley, T Bellagio, ... Philosophical Transactions of the Royal Society B 377 (1857), 20210389, 2022 | 10 | 2022 |
| Towards a genetic theory of island biogeography: Inferring processes from multidimensional community‐scale data I Overcast, G Achaz, R Aguilée, C Andújar, P Arribas, TJ Creedy, ... Global Ecology and Biogeography 32 (1), 4-23, 2023 | 7 | 2023 |
| Genomic evidence of an ancient inland temperate rainforest in the Pacific Northwest of North America M Ruffley, ML Smith, A Espíndola, DF Turck, N Mitchell, B Carstens, ... Molecular Ecology 31 (10), 2985-3001, 2022 | 4 | 2022 |
| Detecting the ecological footprint of selection J Luiselli, I Overcast, A Rominger, M Ruffley, H Morlon, J Rosindell PloS one 19 (6), e0302794, 2024 | 3 | 2024 |
| An image is worth a thousand species: combining neural networks, citizen science, and remote sensing to map biodiversity L Gillespie, M Ruffley, M Expósito-Alonso bioRxiv, 2022.08. 16.504150, 2022 | 2 | 2022 |
| Phylogenetic diversity and community assembly in a naturally fragmented system K Peterson, M Ruffley, CE Parent Ecology and Evolution 11 (24), 18066-18080, 2021 | 2 | 2021 |
| An Image is Worth a Thousand Species: Scaling high-resolution plant biodiversity prediction to biome-level using citizen science data and remote sensing imagery L Gillespie, M Ruffley, M Expósito-Alonso Biodiversity Information Science and Standards 5, e74052, 2021 | 2 | 2021 |
| Deep learning models map rapid plant species changes from citizen science and remote sensing data LE Gillespie, M Ruffley, M Exposito-Alonso Proceedings of the National Academy of Sciences 121 (37), e2318296121, 2024 | 1 | 2024 |
| Conflicts in natural selection constrain adaptation to climate change inArabidopsis thaliana M Ruffley, L Leventhal, S Hateley, SY Rhee, M Exposito-Alonso | 1 | 2023 |
| Selection constraints of plant adaptation can be relaxed by gene editing MR Ruffley, U Lutz, L Levanthal, S Hateley, W Yuan, J Keck, SY Rhee, ... bioRxiv, 2023.10. 16.562583, 2023 | 1 | 2023 |
| Disentangling the genetic trade-offs between flowering time and water use efficiency J Kyung, M Ruffley, U Lutz, D Weigel, M Expósito-Alonso | | 2024 |
