| Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs A Kapusta, Z Kronenberg, VJ Lynch, X Zhuo, LA Ramsay, G Bourque, ... PLoS genetics 9 (4), e1003470, 2013 | 634 | 2013 |
| Dynamics of genome size evolution in birds and mammals A Kapusta, A Suh, C Feschotte Proceedings of the National Academy of Sciences 114 (8), E1460-E1469, 2017 | 308 | 2017 |
| The Burmese python genome reveals the molecular basis for extreme adaptation in snakes TA Castoe, APJ de Koning, KT Hall, DC Card, DR Schield, MK Fujita, ... Proceedings of the National Academy of Sciences 110 (51), 20645-20650, 2013 | 295 | 2013 |
| Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications A Kapusta, C Feschotte Trends in Genetics 30 (10), 439-452, 2014 | 284 | 2014 |
| Ancient Transposable Elements Transformed the Uterine Regulatory Landscape and Transcriptome during the Evolution of Mammalian Pregnancy Cell Reports, 2015 | 229 | 2015 |
| Whole genome analysis of a schistosomiasis-transmitting freshwater snail CM Adema, LDW Hillier, CS Jones, ES Loker, M Knight, P Minx, ... Nature communications 8 (1), 15451, 2017 | 220 | 2017 |
| PiggyMac, a domesticated piggyBac transposase involved in programmed genome rearrangements in the ciliate Paramecium tetraurelia C Baudry, S Malinsky, M Restituito, A Kapusta, S Rosa, E Meyer, ... Genes & development 23 (21), 2478-2483, 2009 | 202 | 2009 |
| The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution JF Gout, D Kahn, L Duret, Paramecium Post-Genomics Consortium PLoS Genetics 6 (5), e1000944, 2010 | 197 | 2010 |
| Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling S Flygare, K Simmon, C Miller, Y Qiao, B Kennedy, T Di Sera, EH Graf, ... Genome biology 17 (1), 1-18, 2016 | 165 | 2016 |
| Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome EP Hamilton, A Kapusta, PE Huvos, SL Bidwell, N Zafar, H Tang, ... Elife 5, e19090, 2016 | 122 | 2016 |
| A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements H Ha, J Song, S Wang, A Kapusta, C Feschotte, KC Chen, J Xing BMC genomics 15, 1-16, 2014 | 119 | 2014 |
| Evolution of bird genomes—a transposon's‐eye view A Kapusta, A Suh Annals of the New York Academy of Sciences 1389 (1), 164-185, 2017 | 115 | 2017 |
| Functional specialization of Piwi proteins in Paramecium tetraurelia from post-transcriptional gene silencing to genome remodelling K Bouhouche, JF Gout, A Kapusta, M Bétermier, E Meyer Nucleic acids research 39 (10), 4249-4264, 2011 | 93 | 2011 |
| Functional characterization of piggyBat from the bat Myotis lucifugus unveils an active mammalian DNA transposon R Mitra, X Li, A Kapusta, D Mayhew, RD Mitra, C Feschotte, NL Craig Proceedings of the National Academy of Sciences 110 (1), 234-239, 2013 | 90 | 2013 |
| A call for benchmarking transposable element annotation methods DR Hoen, G Hickey, G Bourque, J Casacuberta, R Cordaux, C Feschotte, ... Mobile DNA 6, 1-9, 2015 | 88 | 2015 |
| Transposable elements generate regulatory novelty in a tissue-specific fashion M Trizzino, A Kapusta, CD Brown BMC genomics 19, 1-12, 2018 | 80 | 2018 |
| Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia O Arnaiz, JF Goût, M Bétermier, K Bouhouche, J Cohen, L Duret, ... BMC genomics 11 (1), 1-13, 2010 | 77 | 2010 |
| Highly Precise and Developmentally Programmed Genome Assembly in Paramecium Requires Ligase IV–Dependent End Joining A Kapusta, A Matsuda, A Marmignon, M Ku, A Silve, E Meyer, JD Forney, ... PLoS genetics 7 (4), e1002049, 2011 | 66 | 2011 |
| Genomics of Ecological Adaptation in Cactophilic Drosophila Y Guillén, N Rius, A Delprat, A Williford, F Muyas, M Puig, S Casillas, ... Genome biology and evolution 7 (1), 349-366, 2015 | 60 | 2015 |
| Improved genome assembly and annotation for the rock pigeon (Columba livia) C Holt, M Campbell, DA Keays, N Edelman, A Kapusta, E Maclary, ... G3: Genes, Genomes, Genetics 8 (5), 1391-1398, 2018 | 44 | 2018 |
Cedric FeschotteProfessor, Department of Molecular Biology and Genetics, Cornell UniversityVerified email at cornell.edu
