| Polymorphic Cis- and Trans-Regulation of Human Gene Expression VG Cheung, RR Nayak, IX Wang, S Elwyn, SM Cousins, M Morley, ... PLoS biology 8 (9), e1000480, 2010 | 197 | 2010 |
| Dynamics of the male germline stem cell population during aging of Drosophila melanogaster MR Wallenfang, R Nayak, S DiNardo Aging cell 5 (4), 297-304, 2006 | 157 | 2006 |
| Coexpression network based on natural variation in human gene expression reveals gene interactions and functions RR Nayak, M Kearns, RS Spielman, VG Cheung Genome research 19 (11), 1953-1962, 2009 | 146 | 2009 |
| Gene expression and genetic variation in response to endoplasmic reticulum stress in human cells BA Dombroski, RR Nayak, KG Ewens, W Ankener, VG Cheung, ... The American Journal of Human Genetics 86 (5), 719-729, 2010 | 124 | 2010 |
| Human gut bacterial metabolism drives Th17 activation and colitis M Alexander, QY Ang, RR Nayak, AE Bustion, M Sandy, B Zhang, ... Cell host & microbe 30 (1), 17-30. e9, 2022 | 101 | 2022 |
| Pharmacomicrobiomics in inflammatory arthritis: gut microbiome as modulator of therapeutic response JU Scher, RR Nayak, C Ubeda, PJ Turnbaugh, SB Abramson Nature Reviews Rheumatology 16 (5), 282-292, 2020 | 94 | 2020 |
| Phage-delivered CRISPR-Cas9 for strain-specific depletion and genomic deletions in the gut microbiome KN Lam, P Spanogiannopoulos, P Soto-Perez, M Alexander, MJ Nalley, ... Cell Reports 37 (5), 2021 | 92 | 2021 |
| Methotrexate impacts conserved pathways in diverse human gut bacteria leading to decreased host immune activation RR Nayak, M Alexander, I Deshpande, K Stapleton-Gray, B Rimal, ... Cell host & microbe 29 (3), 362-377. e11, 2021 | 88 | 2021 |
| The pretreatment gut microbiome is associated with lack of response to methotrexate in new‐onset rheumatoid arthritis A Artacho, S Isaac, R Nayak, A Flor‐Duro, M Alexander, I Koo, ... Arthritis & rheumatology 73 (6), 931-942, 2021 | 86 | 2021 |
| Genome-wide profiling identifies associations between lupus nephritis and differential methylation of genes regulating tissue hypoxia and type 1 interferon responses A Mok, O Solomon, RR Nayak, P Coit, HL Quach, J Nititham, AH Sawalha, ... Lupus science & medicine 3 (1), e000183, 2016 | 54 | 2016 |
| Mirror, mirror on the wall: which microbiomes will help heal them all? RR Nayak, PJ Turnbaugh BMC medicine 14, 1-8, 2016 | 46 | 2016 |
| Stress-induced changes in gene interactions in human cells RR Nayak, WE Bernal, JW Lee, MJ Kearns, VG Cheung Nucleic acids research 42 (3), 1757-1771, 2014 | 26 | 2014 |
| Perturbation of the human gut microbiome by a non-antibiotic drug contributes to the resolution of autoimmune disease RR Nayak, M Alexander, K Stapleton-Grey, C Ubeda, JU Scher, ... Biorxiv, 600155, 2019 | 16 | 2019 |
| Methotrexate is an antibacterial drug metabolized by human gut bacteria RR Nayak, K Stapleton-Gray, C O'Loughlin, M Fischbach, PJ Turnbaugh Arthritis & Rheumatology 69, 2017 | 10 | 2017 |
| CE-48 Residential proximity to highways, DNA methylation and systemic lupus erythematosus CM Lanata, J Nititham, K Taylor, R Nayak, L Barcellos, SA Chung, ... Lupus Science & Medicine 3 (Suppl 1), 2016 | 9 | 2016 |
| Western diet and psoriatic-like skin and joint diseases: A potential role for the gut microbiota RR Nayak Journal of Investigative Dermatology 141 (7), 1630-1632, 2021 | 8 | 2021 |
| A diet-dependent enzyme from the human gut microbiome promotes Th17 cell accumulation and colitis M Alexander, QY Ang, RR Nayak, AE Bustion, V Upadhyay, KS Pollard, ... bioRxiv, 766899, 2019 | 6 | 2019 |
| Op0119 the pre-treatment gut microbiome predicts early response to rheumatoid arthritis therapy S Isaac, A Artacho, R Nayak, A Flor, S Abramson, P Rosenthal, ... Annals of the Rheumatic Diseases 78 (Suppl 2), 133-134, 2019 | 6 | 2019 |
| Improving pneumococcal vaccination rates for immunosuppressed patients in an academic rheumatology clinic A Bays, RR Nayak, S Murray, D Young, G Schmajuk, J Yazdany, A Gross Arthritis & Rheumatology 68, 2016 | 5 | 2016 |
| SIMMER employs similarity algorithms to accurately identify human gut microbiome species and enzymes capable of known chemical transformations AE Bustion, RR Nayak, A Agrawal, PJ Turnbaugh, KS Pollard Elife 12, e82401, 2023 | 3 | 2023 |
