| Evolution of genes and genomes on the Drosophila phylogeny AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ... Nature 450 (7167), 203-18, 2007 | 2289 | 2007 |
| MUMmer4: A fast and versatile genome alignment system G Marçais, AL Delcher, AM Phillippy, R Coston, SL Salzberg, A Zimin PLoS computational biology 14 (1), e1005944, 2018 | 1794 | 2018 |
| The MaSuRCA genome assembler AV Zimin, G Marçais, D Puiu, M Roberts, SL Salzberg, JA Yorke Bioinformatics 29 (21), 2669-2677, 2013 | 1491 | 2013 |
| A whole-genome assembly of the domestic cow, Bos taurus AV Zimin, AL Delcher, L Florea, DR Kelley, MC Schatz, D Puiu, ... Genome biology 10, 1-10, 2009 | 1391 | 2009 |
| Transcriptome assembly from long-read RNA-seq alignments with StringTie2 S Kovaka, AV Zimin, GM Pertea, R Razaghi, SL Salzberg, M Pertea Genome biology 20, 1-13, 2019 | 1357 | 2019 |
| Butterfly genome reveals promiscuous exchange of mimicry adaptations among species Nature 487 (7405), 94-98, 2012 | 1249 | 2012 |
| A local ensemble Kalman filter for atmospheric data assimilation E Ott, BR Hunt, I Szunyogh, AV Zimin, EJ Kostelich, M Corazza, E Kalnay, ... Tellus A: Dynamic Meteorology and Oceanography 56 (5), 415-428, 2004 | 1080 | 2004 |
| The Atlantic salmon genome provides insights into rediploidization S Lien, BF Koop, SR Sandve, JR Miller, MP Kent, T Nome, TR Hvidsten, ... Nature 533 (7602), 200-205, 2016 | 1065 | 2016 |
| GAGE: A critical evaluation of genome assemblies and assembly algorithms SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ... Genome research 22 (3), 557-567, 2012 | 902 | 2012 |
| A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023 | 611 | 2023 |
| Genome sequence of the progenitor of the wheat D genome Aegilops tauschii MC Luo, YQ Gu, D Puiu, H Wang, SO Twardziok, KR Deal, N Huo, T Zhu, ... Nature 551 (7681), 498-502, 2017 | 603 | 2017 |
| Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies DB Neale, JL Wegrzyn, KA Stevens, AV Zimin, D Puiu, MW Crepeau, ... Genome biology 15, 1-13, 2014 | 562 | 2014 |
| De novo assembly of the cattle reference genome with single-molecule sequencing BD Rosen, DM Bickhart, RD Schnabel, S Koren, CG Elsik, E Tseng, ... Gigascience 9 (3), giaa021, 2020 | 521 | 2020 |
| Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis RA Dalloul, JA Long, AV Zimin, L Aslam, K Beal, L Ann Blomberg, ... PLoS biology 8 (9), e1000475, 2010 | 481 | 2010 |
| Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm AV Zimin, D Puiu, MC Luo, T Zhu, S Koren, G Marçais, JA Yorke, J Dvořák, ... Genome research 27 (5), 787-792, 2017 | 436 | 2017 |
| Sequencing and assembly of the 22-Gb loblolly pine genome A Zimin, KA Stevens, MW Crepeau, A Holtz-Morris, M Koriabine, ... Genetics 196 (3), 875-890, 2014 | 399 | 2014 |
| The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts Z Liu, S Liu, J Yao, L Bao, J Zhang, Y Li, C Jiang, L Sun, R Wang, ... Nature communications 7 (1), 11757, 2016 | 349 | 2016 |
| Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile) CD Smith, A Zimin, C Holt, E Abouheif, R Benton, E Cash, V Croset, ... Proceedings of the National Academy of Sciences 108 (14), 5673-5678, 2011 | 340 | 2011 |
| Draft genome of the red harvester ant Pogonomyrmex barbatus CR Smith, CD Smith, HM Robertson, M Helmkampf, A Zimin, M Yandell, ... Proceedings of the National Academy of Sciences 108 (14), 5667-5672, 2011 | 309 | 2011 |
| Four-dimensional ensemble Kalman filtering BR Hunt, E Kalnay, EJ Kostelich, E Ott, DJ Patil, T Sauer, I Szunyogh, ... Tellus A: Dynamic Meteorology and Oceanography 56 (4), 273-277, 2004 | 308 | 2004 |
Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityVerified email at jhu.edu
