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Simon DW Frost
Simon DW Frost
Microsoft Premonition
Verified email at microsoft.com
Title
Cited by
Cited by
Year
HyPhy: hypothesis testing using phylogenies
SL Pond, SD Frost, SV Muse
Bioinformatics 21, 676-679, 2005
34052005
Not so different after all: a comparison of methods for detecting amino acid sites under selection
SLK Pond, SDW Frost
Molecular Biology and Evolution 22 (5), 1208-1222, 2005
22442005
Datamonkey: rapid detection of selective pressure on individual sites of codon alignments
SLK Pond, SDW Frost
Bioinformatics 21 (10), 2531-2533, 2005
14892005
Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology
W Delport, AFY Poon, SDW Frost, SLK Pond
Bioinformatics 26 (19), 2455-2457, 2010
13062010
Automated phylogenetic detection of recombination using a genetic algorithm
SLK Pond, D Posada, MB Gravenor, CH Woelk, SDW Frost
Molecular biology and evolution 23 (10), 1891-1901, 2006
9892006
GARD: a genetic algorithm for recombination detection
SL Kosakovsky Pond, D Posada, MB Gravenor, CH Woelk, SDW Frost
Bioinformatics 22 (24), 3096-3098, 2006
8312006
Modeling infectious disease dynamics in the complex landscape of global health
H Heesterbeek, RM Anderson, V Andreasen, S Bansal, D De Angelis, ...
Science 347 (6227), aaa4339, 2015
7202015
Producing polished prokaryotic pangenomes with the Panaroo pipeline
G Tonkin-Hill, N MacAlasdair, C Ruis, A Weimann, G Horesh, JA Lees, ...
Genome biology 21, 1-21, 2020
5032020
A random effects branch-site model for detecting episodic diversifying selection
SLK Pond, B Murrell, M Fourment, SDW Frost, W Delport, K Scheffler
Molecular biology and evolution 28 (11), 3033-3043, 2011
4642011
Neutralizing antibody responses drive the evolution of human immunodeficiency virus type 1 envelope during recent HIV infection
SDW Frost, T Wrin, DM Smith, SLK Pond, Y Liu, E Paxinos, C Chappey, ...
Proceedings of the National Academy of Sciences of the United States of†…, 2005
3902005
HyPhy 2.5—A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies
SL Kosakovsky Pond, AFY Poon, R Velazquez, S Weaver, NL Hepler, ...
Molecular Biology and Evolution, 2019
3612019
Evaluation of respondent-driven sampling
N McCreesh, SDW Frost, J Seeley, J Katongole, MN Tarsh, R Ndunguse, ...
Epidemiology 23 (1), 138, 2012
3362012
Phylodynamics of infectious disease epidemics
EM Volz, SLK Pond, MJ Ward, AJL Brown, SDW Frost
Genetics 183 (4), 1421-1430, 2009
2752009
Persistence of transmitted drug resistance among subjects with primary human immunodeficiency virus infection
SJ Little, SDW Frost, JK Wong, DM Smith, SLK Pond, CC Ignacio, ...
Journal of virology 82 (11), 5510-5518, 2008
2662008
Adaptation to different human populations by HIV-1 revealed by codon-based analyses
SL Kosakovsky Pond, SDW Frost, Z Grossman, MB Gravenor, ...
PLoS Comput Biol 2 (6), e62, 2006
2662006
Evolution of envelope sequences of human immunodeficiency virus type 1 in cellular reservoirs in the setting of potent antiviral therapy
HF GŁnthard, SDW Frost, AJ Leigh-Brown, CC Ignacio, K Kee, ...
Journal of virology 73 (11), 9404-9412, 1999
2571999
A genetic algorithm approach to detecting lineage-specific variation in selection pressure
SLK Pond, SDW Frost
Molecular biology and evolution 22 (3), 478-485, 2005
2292005
Characterization of human immunodeficiency virus type 1 (HIV-1) envelope variation and neutralizing antibody responses during transmission of HIV-1 subtype B
SDW Frost, Y Liu, SLK Pond, C Chappey, T Wrin, CJ Petropoulos, ...
Journal of virology 79 (10), 6523-6527, 2005
2192005
RhierBAPS: An R implementation of the population clustering algorithm hierBAPS
G Tonkin-Hill, JA Lees, SD Bentley, SDW Frost, J Corander
Wellcome Open Research 3, 2018
2142018
Evolution of lamivudine resistance in human immunodeficiency virus type 1-infected individuals: the relative roles of drift and selection
SDW Frost, M Nijhuis, R Schuurman, CAB Boucher, AJL Brown
Journal of virology 74 (14), 6262-6268, 2000
2092000
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Articles 1–20