James Maley
James Maley
Maley Biological Consulting
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hzar: hybrid zone analysis using an R software package
EP Derryberry, GE Derryberry, JM Maley, RT Brumfield
Molecular ecology resources 14 (3), 652-663, 2014
AVONET: morphological, ecological and geographical data for all birds
JA Tobias, C Sheard, AL Pigot, AJM Devenish, J Yang, F Sayol, ...
Ecology Letters 25 (3), 581-597, 2022
Comparative analyses of vertebrate gut microbiomes reveal convergence between birds and bats
SJ Song, JG Sanders, F Delsuc, J Metcalf, K Amato, MW Taylor, F Mazel, ...
MBio 11 (1), 10.1128/mbio. 02901-19, 2020
Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences
JE McCormack, JM Maley, SM Hird, EP Derryberry, GR Graves, ...
Molecular Phylogenetics and Evolution 62 (1), 397-406, 2012
Similarity thresholds used in DNA sequence assembly from short reads can reduce the comparability of population histories across species
MG Harvey, CD Judy, GF Seeholzer, JM Maley, GR Graves, RT Brumfield
PeerJ 3, e895, 2015
A rapid and cost-effective pipeline for digitization of museum specimens with 3D photogrammetry
JJ Medina, JM Maley, S Sannapareddy, NN Medina, CM Gilman, ...
PLoS One 15 (8), e0236417, 2020
More than skin and bones: Comparing extraction methods and alternative sources of DNA from avian museum specimens
WLE Tsai, ME Schedl, JM Maley, JE McCormack
Molecular ecology resources 20 (5), 1220-1227, 2020
Speciation in Western Scrub-Jays, Haldane’s rule, and genetic clines in secondary contact
FC Gowen, JM Maley, C Cicero, AT Peterson, BC Faircloth, TC Warr, ...
BMC evolutionary biology 14 (1), 1-15, 2014
Paraphyly of Cinclodes fuscus (Aves: Passeriformes: Furnariidae): Implications for taxonomy and biogeography
C Sanín, CD Cadena, JM Maley, DA Lijtmaer, PL Tubaro, RT Chesser
Molecular Phylogenetics and Evolution 53 (2), 547-555, 2009
Combining ultraconserved elements and mtDNA data to uncover lineage diversity in a Mexican highland frog (Sarcohyla; Hylidae)
E Zarza, EM Connors, JM Maley, WLE Tsai, P Heimes, M Kaplan, ...
PeerJ 6, e6045, 2018
Mitochondrial and Next-Generation Sequence Data used to Infer Phylogenetic Relationships and Species Limits in the Clapper/King Rail Complex
JM Maley, RT Brumfield
The Condor 115 (2), 316-329, 2013
Cloudy with a chance of speciation: integrative taxonomy reveals extraordinary divergence within a Mesoamerican cloud forest bird
MX Venkatraman, DA Deraad, WLE Tsai, E Zarza, AJ Zellmer, JM Maley, ...
Biological Journal of the Linnean Society 126 (1), 1-15, 2018
Interpreting negative results with taxonomic and conservation implications: Another look at the distinctness of coastal California Gnatcatchers
JE McCormack, JM Maley
The Auk: Ornithological Advances 132 (2), 380-388, 2015
Museum genomics reveals the speciation history of Dendrortyx wood-partridges in the Mesoamerican highlands
WLE Tsai, C Mota-Vargas, O Rojas-Soto, R Bhowmik, EY Liang, ...
Molecular Phylogenetics and Evolution 136, 29-34, 2019
Diversification at high latitudes: speciation of buntings in the genus Plectrophenax inferred from mitochondrial and nuclear markers
JM Maley, K Winker
Molecular Ecology 19 (4), 785-797, 2010
Ecological Speciation of King Rails (Rallus Elegans) and Clapper Rails (Rallus Longirostris)
JM Maley
Louisiana State University and Agricultural & Mechanical College, 2012
Evidence from the genetics of landbirds for a forested Pleistocene glacial refugium in the Haida Gwaii area
CL Pruett, CM Topp, JM Maley, KG McCracken, S Rohwer, S Birks, ...
The Condor 115 (4), 725-737, 2013
Characterization of microsatellite loci for a threatened species, the King Rail, Rallus elegans, using a next-generation sequencing protocol
CL Brackett, JM Maley, RT Brumfield, SB McRae
Conservation Genetics Resources 5, 1189-1191, 2013
Use of Juvenal Plumage in Diagnosing Species Limits: An Example Using Buntings in the Genus Plectrophenax
JM Maley, K Winker
The Auk 124 (3), 907-915, 2007
Phenotypic clines across an unstudied hybrid zone in Woodhouse’s Scrub-Jay (Aphelocoma woodhouseii)
DA DeRaad, JM Maley, WLE Tsai, JE McCormack
The Auk: Ornithological Advances 136 (2), uky018, 2019
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