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Jonathan Gent
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Improved maize reference genome with single-molecule technologies
Y Jiao, P Peluso, J Shi, T Liang, MC Stitzer, B Wang, MS Campbell, ...
Nature 546 (7659), 524-527, 2017
10922017
CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize
JI Gent, NA Ellis, L Guo, AE Harkess, Y Yao, X Zhang, RK Dawe
Genome research 23 (4), 628-637, 2013
3182013
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes
MB Hufford, AS Seetharam, MR Woodhouse, KM Chougule, S Ou, J Liu, ...
Science 373 (6555), 655-662, 2021
3152021
Distinct phases of siRNA synthesis in an endogenous RNAi pathway in C. elegans soma
JI Gent, AT Lamm, DM Pavelec, JM Maniar, P Parameswaran, L Tao, ...
Molecular cell 37 (5), 679-689, 2010
2102010
RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome
Q Li, JI Gent, G Zynda, J Song, I Makarevitch, CD Hirsch, CN Hirsch, ...
Proceedings of the National Academy of Sciences 112 (47), 14728-14733, 2015
2092015
Spreading of heterochromatin is limited to specific families of maize retrotransposons
SR Eichten, NA Ellis, I Makarevitch, CT Yeh, JI Gent, L Guo, KM McGinnis, ...
PLoS genetics 8 (12), e1003127, 2012
1672012
Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize
R Oka, J Zicola, B Weber, SN Anderson, C Hodgman, JI Gent, ...
Genome biology 18, 1-24, 2017
1502017
A kinesin-14 motor activates neocentromeres to promote meiotic drive in maize
RK Dawe, EG Lowry, JI Gent, MC Stitzer, KW Swentowsky, DM Higgins, ...
Cell 173 (4), 839-850. e18, 2018
1132018
A Caenorhabditis elegans RNA-directed RNA polymerase in sperm development and endogenous RNA interference
JI Gent, M Schvarzstein, AM Villeneuve, SG Gu, V Jantsch, AZ Fire, ...
Genetics 183 (4), 1297-1314, 2009
1112009
Accessible DNA and relative depletion of H3K9me2 at maize loci undergoing RNA-directed DNA methylation
JI Gent, TF Madzima, R Bader, MR Kent, X Zhang, M Stam, KM McGinnis, ...
The Plant Cell 26 (12), 4903-4917, 2014
1092014
Gapless assembly of maize chromosomes using long-read technologies
J Liu, AS Seetharam, K Chougule, S Ou, KW Swentowsky, JI Gent, ...
Genome Biology 21, 1-17, 2020
1002020
Haploid induction by a maize cenh3 null mutant
N Wang, JI Gent, RK Dawe
Science Advances 7 (4), eabe2299, 2021
832021
RNA as a structural and regulatory component of the centromere
JI Gent, RK Dawe
Annual review of genetics 46, 443-453, 2012
692012
Strong epigenetic similarity between maize centromeric and pericentromeric regions at the level of small RNAs, DNA methylation and H3 chromatin modifications
JI Gent, Y Dong, J Jiang, RK Dawe
Nucleic acids research 40 (4), 1550-1560, 2012
572012
Multimodal RNA-seq using single-strand, double-strand, and CircLigase-based capture yields a refined and extended description of the C. elegans transcriptome
AT Lamm, MR Stadler, H Zhang, JI Gent, AZ Fire
Genome research 21 (2), 265-275, 2011
482011
Loss of RNA-directed DNA methylation in maize chromomethylase and DDM1-type nucleosome remodeler mutants
FF Fu, RK Dawe, JI Gent
The Plant Cell 30 (7), 1617-1627, 2018
462018
Stable centromere positioning in diverse sequence contexts of complex and satellite centromeres of maize and wild relatives
JI Gent, N Wang, RK Dawe
Genome Biology 18, 1-11, 2017
392017
Distinct influences of tandem repeats and retrotransposons on CENH3 nucleosome positioning
JI Gent, KL Schneider, CN Topp, C Rodriguez, GG Presting, RK Dawe
Epigenetics & chromatin 4, 1-12, 2011
322011
On the nature of in vivo requirements for rde-4 in RNAi and developmental pathways in C. elegans
D Blanchard, P Parameswaran, J Lopez-Molina, J Gent, JF Saynuk, A Fire
RNA biology 8 (3), 458-467, 2011
302011
Genome-wide redistribution of 24-nt siRNAs in rice gametes
C Li, H Xu, FF Fu, SD Russell, V Sundaresan, JI Gent
Genome Research 30 (2), 173-184, 2020
292020
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Articles 1–20