| The impact of the gut microbiota on human health: an integrative view JC Clemente, LK Ursell, LW Parfrey, R Knight Cell 148 (6), 1258-1270, 2012 | 3653 | 2012 |
| The SILVA and “all-species living tree project (LTP)” taxonomic frameworks P Yilmaz, LW Parfrey, P Yarza, J Gerken, E Pruesse, C Quast, T Schweer, ... Nucleic acids research 42 (D1), D643-D648, 2014 | 2362 | 2014 |
| The revised classification of eukaryotes SM Adl, AGB Simpson, CE Lane, J Lukeš, D Bass, SS Bowser, MW Brown, ... Journal of eukaryotic microbiology 59 (5), 429-514, 2012 | 1888 | 2012 |
| Decoupling function and taxonomy in the global ocean microbiome S Louca, LW Parfrey, M Doebeli Science 353 (6305), 1272-1277, 2016 | 1610 | 2016 |
| Defining the human microbiome LK Ursell, JL Metcalf, LW Parfrey, R Knight Nutrition reviews 70 (suppl_1), S38-S44, 2012 | 1163 | 2012 |
| Estimating the timing of early eukaryotic diversification with multigene molecular clocks LW Parfrey, DJG Lahr, AH Knoll, LA Katz Proceedings of the National Academy of Sciences 108 (33), 13624-13629, 2011 | 806 | 2011 |
| Function and functional redundancy in microbial systems S Louca, MF Polz, F Mazel, MBN Albright, JA Huber, MI O’Connor, ... Nature ecology & evolution 2 (6), 936-943, 2018 | 794 | 2018 |
| Experimental and analytical tools for studying the human microbiome J Kuczynski, CL Lauber, WA Walters, LW Parfrey, JC Clemente, D Gevers, ... Nature Reviews Genetics 13 (1), 47-58, 2012 | 774 | 2012 |
| High taxonomic variability despite stable functional structure across microbial communities S Louca, SMS Jacques, APF Pires, JS Leal, DS Srivastava, LW Parfrey, ... Nature ecology & evolution 1 (1), 0015, 2016 | 387 | 2016 |
| The amphibian skin‐associated microbiome across species, space and life history stages JG Kueneman, LW Parfrey, DC Woodhams, HM Archer, R Knight, ... Molecular ecology 23 (6), 1238-1250, 2014 | 358 | 2014 |
| A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system JL Metcalf, L Wegener Parfrey, A Gonzalez, CL Lauber, D Knights, ... elife 2, e01104, 2013 | 329 | 2013 |
| Convergence of gut microbiomes in myrmecophagous mammals F Delsuc, JL Metcalf, L Wegener Parfrey, SJ Song, A González, R Knight Molecular ecology 23 (6), 1301-1317, 2014 | 292 | 2014 |
| Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (Plethodon cinereus) AH Loudon, DC Woodhams, LW Parfrey, H Archer, R Knight, V McKenzie, ... The ISME journal 8 (4), 830-840, 2014 | 289 | 2014 |
| Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life LW Parfrey, J Grant, YI Tekle, E Lasek-Nesselquist, HG Morrison, ... Systematic biology 59 (5), 518-533, 2010 | 253 | 2010 |
| Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem S Louca, M Doebeli, LW Parfrey Microbiome 6, 1-12, 2018 | 241 | 2018 |
| Microbial eukaryotes in the human microbiome: ecology, evolution, and future directions LW Parfrey, WA Walters, R Knight Frontiers in microbiology 2, 153, 2011 | 225 | 2011 |
| Evaluating support for the current classification of eukaryotic diversity LW Parfrey, E Barbero, E Lasser, M Dunthorn, D Bhattacharya, ... PLoS genetics 2 (12), e220, 2006 | 215 | 2006 |
| Associations between infant fungal and bacterial dysbiosis and childhood atopic wheeze in a nonindustrialized setting MC Arrieta, A Arévalo, L Stiemsma, P Dimitriu, ME Chico, S Loor, M Vaca, ... Journal of Allergy and Clinical Immunology 142 (2), 424-434. e10, 2018 | 183 | 2018 |
| Are human intestinal eukaryotes beneficial or commensals? J Lukeš, CR Stensvold, K Jirků-Pomajbíková, L Wegener Parfrey PLoS pathogens 11 (8), e1005039, 2015 | 174 | 2015 |
| The dynamic nature of eukaryotic genomes LW Parfrey, DJG Lahr, LA Katz Molecular biology and evolution 25 (4), 787-794, 2008 | 171 | 2008 |
Jose C. ClementeAssociate Professor, Icahn School of Medicine at Mount SinaiVerified email at mssm.edu
