Ana Teresa Freitas
Ana Teresa Freitas
Professor of Computer Science, INESC-ID, Instituto Superior Técnico, Universidade Técnica de Lisboa
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The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae
MC Teixeira, P Monteiro, P Jain, S Tenreiro, AR Fernandes, NP Mira, ...
Nucleic acids research 34 (suppl_1), D446-D451, 2006
Current tools for the identification of miRNA genes and their targets
ND Mendes, AT Freitas, MF Sagot
Nucleic acids research 37 (8), 2419-2433, 2009
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
MC Teixeira, PT Monteiro, JF Guerreiro, JP Gonçalves, NP Mira, ...
Nucleic acids research 42 (D1), D161-D166, 2014
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface
D Abdulrehman, PT Monteiro, MC Teixeira, NP Mira, AB Lourenco, ...
Nucleic acids research 39 (suppl_1), D136-D140, 2010
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae
PT Monteiro, ND Mendes, MC Teixeira, S d’Orey, S Tenreiro, NP Mira, ...
Nucleic acids research 36 (suppl_1), D132-D136, 2007
Metagenome enrichment approach used for selection of oil-degrading bacteria consortia for drill cutting residue bioremediation
AB Guerra, JS Oliveira, RCB Silva-Portela, W Araújo, AC Carlos, ...
Environmental Pollution 235, 869-880, 2018
Evaluation of reduced susceptibility to quaternary ammonium compounds and bisbiguanides in clinical isolates and laboratory-generated mutants of Staphylococcus aureus
L Furi, ML Ciusa, D Knight, V Di Lorenzo, N Tocci, D Cirasola, L Aragones, ...
Antimicrobial agents and chemotherapy 57 (8), 3488-3497, 2013
Using machine learning to improve the prediction of functional outcome in ischemic stroke patients
M Monteiro, AC Fonseca, AT Freitas, TP e Melo, AP Francisco, JM Ferro, ...
IEEE/ACM transactions on computational biology and bioinformatics 15 (6 …, 2018
A novel resistance mechanism to triclosan that suggests horizontal gene transfer and demonstrates a potential selective pressure for reduced biocide susceptibility in clinical …
ML Ciusa, L Furi, D Knight, F Decorosi, M Fondi, C Raggi, JR Coelho, ...
International Journal of Antimicrobial Agents, 2012
Temporal logic patterns for querying dynamic models of cellular interaction networks
PT Monteiro, D Ropers, R Mateescu, AT Freitas, H De Jong
Bioinformatics 24 (16), i227-i233, 2008
The semantic web in translational medicine: current applications and future directions
CM Machado, D Rebholz-Schuhmann, AT Freitas, FM Couto
Briefings in bioinformatics 16 (1), 89-103, 2015
An efficient algorithm for the identification of structured motifs in DNA promoter sequences
AM Carvalho, AT Freitas, AL Oliveira, MF Sagot
IEEE/ACM Transactions on Computational Biology and Bioinformatics 3 (2), 126-140, 2006
Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries
JAP Paiva, E Prat, S Vautrin, MD Santos, H San-Clemente, ...
BMC genomics 12, 1-13, 2011
A highly scalable algorithm for the extraction of cis-regulatory regions
AM Carvalho, AT Freitas, AL Oliveira, MF Sagot
Proceedings Of The 3rd Asia-Pacific Bioinformatics Conference, 273-282, 2005
NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language
LP Coelho, R Alves, P Monteiro, J Huerta-Cepas, AT Freitas, P Bork
Microbiome 7, 1-10, 2019
CSA: an efficient algorithm to improve circular DNA multiple alignment
F Fernandes, L Pereira, AT Freitas
BMC bioinformatics 10, 1-13, 2009
Vitamin D-related polymorphisms and vitamin D levels as risk biomarkers of COVID-19 disease severity
AT Freitas, C Calhau, G Antunes, B Araújo, M Bandeira, S Barreira, ...
Scientific reports 11 (1), 20837, 2021
MUSA: a parameter free algorithm for the identification of biologically significant motifs
ND Mendes, AC Casimiro, PM Santos, I Sa-Correia, AL Oliveira, ...
Bioinformatics 22 (24), 2996-3002, 2006
Significant differences characterise the correlation coefficients between biocide and antibiotic susceptibility profiles in Staphylococcus aureus
M R Oggioni, J Rosado Coelho, L Furi, D R Knight, C Viti, G Orefici, ...
Current Pharmaceutical Design 21 (16), 2054-2057, 2015
The use of machine learning methodologies to analyse antibiotic and biocide susceptibility in Staphylococcus aureus
JR Coelho, JA Carriço, D Knight, JL Martínez, I Morrissey, MR Oggioni, ...
PLoS One 8 (2), e55582, 2013
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