Andrey Revyakin
Andrey Revyakin
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A general method to improve fluorophores for live-cell and single-molecule microscopy
JB Grimm, BP English, J Chen, JP Slaughter, Z Zhang, A Revyakin, ...
Nature methods 12 (3), 244-250, 2015
Single-molecule dynamics of enhanceosome assembly in embryonic stem cells
J Chen, Z Zhang, L Li, BC Chen, A Revyakin, B Hajj, W Legant, M Dahan, ...
Cell 156 (6), 1274-1285, 2014
Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching
A Revyakin, C Liu, RH Ebright, TR Strick
Science 314 (5802), 1139-1143, 2006
Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex
V Mekler, E Kortkhonjia, J Mukhopadhyay, J Knight, A Revyakin, ...
Cell 108 (5), 599-614, 2002
Structural organization of the RNA polymerase-promoter open complex
N Naryshkin, A Revyakin, Y Kim, V Mekler, RH Ebright
Cell 101 (6), 601-611, 2000
Promoter unwinding and promoter clearance by RNA polymerase: detection by single-molecule DNA nanomanipulation
A Revyakin, RH Ebright, TR Strick
Proceedings of the National Academy of Sciences 101 (14), 4776-4780, 2004
Whole-cell, multicolor superresolution imaging using volumetric multifocus microscopy
B Hajj, J Wisniewski, M El Beheiry, J Chen, A Revyakin, C Wu, M Dahan
Proceedings of the National Academy of Sciences 111 (49), 17480-17485, 2014
Transcription initiation by human RNA polymerase II visualized at single-molecule resolution
A Revyakin, Z Zhang, RA Coleman, Y Li, C Inouye, JK Lucas, SR Park, ...
Genes & development 26 (15), 1691-1702, 2012
Single-molecule DNA nanomanipulation: improved resolution through use of shorter DNA fragments
A Revyakin, RH Ebright, TR Strick
Nature methods 2 (2), 127-138, 2005
Single-molecule tracking of the transcription cycle by sub-second RNA detection
Z Zhang, A Revyakin, JB Grimm, LD Lavis, R Tjian
Elife 3, e01775, 2014
Rapid dynamics of general transcription factor TFIIB binding during preinitiation complex assembly revealed by single-molecule analysis
Z Zhang, BP English, JB Grimm, SA Kazane, W Hu, A Tsai, C Inouye, ...
Genes & development 30 (18), 2106-2118, 2016
Single-molecule studies using magnetic traps
T Lionnet, JF Allemand, A Revyakin, TR Strick, OA Saleh, D Bensimon, ...
Cold Spring Harbor Protocols 2012 (1), pdb. top067488, 2012
Magnetic trap construction
T Lionnet, JF Allemand, A Revyakin, TR Strick, OA Saleh, D Bensimon, ...
Cold Spring Harbor Protocols 2012 (1), pdb. prot067496, 2012
Single-molecule DNA nanomanipulation: detection of promoter-unwinding events by RNA polymerase
A Revyakin, JF Allemand, V Croquette, RH Ebright, TR Strick
Methods in enzymology 370, 577-598, 2003
A single-molecule surface-based platform to detect the assembly and function of the human RNA polymerase II transcription machinery
SR Park, J Hauver, Y Zhang, A Revyakin, RA Coleman, R Tjian, S Chu, ...
Structure 28 (12), 1337-1343. e4, 2020
Cloud-point PEG glass surfaces for imaging of immobilized single molecules by total-internal-reflection microscopy
Z Zhang, SR Park, A Pertsinidis, A Revyakin
Bio-protocol 6 (7), e1784-e1784, 2016
Azetidine-substituted fluorescent compounds
LD Lavis, JB Grimm, C Jiji, T Lionnet, Z Zhang, A Revyakin, J Slaughter
US Patent 9,933,417, 2018
Practical and Scalable Synthesis of 7-Azetidin-1-yl-4-(hydroxymethyl) coumarin: An Improved Photoremovable Group
G Bassolino, EA Halabi, P Rivera-Fuentes
Synthesis 50 (04), 846-852, 2018
Surface Passivation Methods for Single Molecule Imaging of Biochemical Reactions
Z Zhang, A Revyakin, S Chu, R Tijan
US Patent App. 13/397,423, 2012
Static and kinetic site-specific protein-DNA photocrosslinking: analysis of bacterial transcription initiation complexes
N Naryshkin, S Druzhinin, A Revyakin, Y Kim, V Mekler, RH Ebright
DNA-Protein Interactions: Principles and Protocols, Third Edition, 403-437, 2009
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