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Matthew Johnson
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HybPiper: Extracting coding sequence and introns for phylogenetics from high‐throughput sequencing reads using target enrichment
MG Johnson, EM Gardner, Y Liu, R Medina, B Goffinet, AJ Shaw, ...
Applications in plant sciences 4 (7), 1600016, 2016
3082016
A universal probe set for targeted sequencing of 353 nuclear genes from any flowering plant designed using k-medoids clustering
M Johnson, L Pokorny, S Dodsworth, LR Botigue, RS Cowan, A Devault, ...
Systematic Biology 68 (5), 594-606, 2019
2332019
Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes
Y Liu, MG Johnson, CJ Cox, R Medina, N Devos, A Vanderpoorten, ...
Nature Communications 10 (1), 1-11, 2019
1302019
Practical considerations for plant phylogenomics
MR McKain, MG Johnson, S Uribe‐Convers, D Eaton, Y Yang
Applications in plant sciences 6 (3), e1038, 2018
1202018
Bridging the micro‐and macroevolutionary levels in phylogenomics: Hyb‐Seq solves relationships from populations to species and above
T Villaverde, L Pokorny, S Olsson, M Rincón‐Barrado, MG Johnson, ...
New Phytologist 220 (2), 636-650, 2018
892018
Morphologically cryptic biological species within the liverwort Frullania asagrayana
M Ramaiya, MG Johnson, B Shaw, J Heinrichs, J Hentschel, M von Konrat, ...
American journal of botany 97 (10), 1707-1718, 2010
742010
Evolution of niche preference in Sphagnum peat mosses
MG Johnson, G Granath, T Tahvanainen, R Pouliot, HK Stenřien, ...
Evolution 69 (1), 90-103, 2015
602015
Hyb-Seq for flowering plant systematics
S Dodsworth, L Pokorny, MG Johnson, JT Kim, O Maurin, NJ Wickett, ...
Trends in Plant Science 24 (10), 887-891, 2019
592019
Phylogenomic delineation of Physcomitrium (Bryophyta: Funariaceae) based on targeted sequencing of nuclear exons and their flanking regions rejects the retention of …
R Medina, MG Johnson, Y Liu, NJ Wickett, AJ Shaw, B Goffinet
Journal of Systematics and Evolution 57 (4), 404-417, 2019
532019
Strategies for reducing per‐sample costs in target capture sequencing for phylogenomics and population genomics in plants
H Hale, EM Gardner, J Viruel, L Pokorny, MG Johnson
Applications in plant sciences 8 (4), e11337, 2020
482020
Analyses of transcriptome sequences reveal multiple ancient large‐scale duplication events in the ancestor of Sphagnopsida (Bryophyta)
N Devos, P Szövényi, DJ Weston, CJ Rothfels, MG Johnson, AJ Shaw
New Phytologist 211 (1), 300-318, 2016
472016
Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus
HR Kates, MG Johnson, EM Gardner, NJC Zerega, NJ Wickett
American Journal of Botany 105 (3), 404-416, 2018
462018
The sphagnome project: enabling ecological and evolutionary insights through a genus‐level sequencing project
DJ Weston, MR Turetsky, MG Johnson, G Granath, Z Lindo, LR Belyea, ...
New Phytologist 217 (1), 16-25, 2018
442018
A comprehensive phylogenomic platform for exploring the angiosperm tree of life
WJ Baker, P Bailey, V Barber, A Barker, S Bellot, D Bishop, LR Botigué, ...
Systematic biology 71 (2), 301-319, 2022
402022
Low‐coverage, whole‐genome sequencing of Artocarpus camansi (Moraceae) for phylogenetic marker development and gene discovery
EM Gardner, MG Johnson, D Ragone, NJ Wickett, NJC Zerega
Applications in plant sciences 4 (7), 1600017, 2016
352016
Genetic diversity, sexual condition, and microhabitat preference determine mating patterns in Sphagnum (Sphagnaceae) peat-mosses
MG Johnson, AJ Shaw
Biological Journal of the Linnean Society 115 (1), 96-113, 2015
352015
Aposematic signals in North American black widows are more conspicuous to predators than to prey
N Brandley, M Johnson, S Johnsen
Behavioral Ecology 27 (4), 1104-1112, 2016
342016
Interploidal hybridization and mating patterns in the Sphagnum subsecundum complex
M Ricca, P Szövényi, EM Temsch, MG Johnson, AJ Shaw
Molecular ecology 20 (15), 3202-3218, 2011
332011
Target sequence capture of nuclear‐encoded genes for phylogenetic analysis in ferns
PG Wolf, TA Robison, MG Johnson, MA Sundue, WL Testo, CJ Rothfels
Applications in Plant Sciences 6 (5), e01148, 2018
312018
Evolutionary dynamism in bryophytes: phylogenomic inferences confirm rapid radiation in the moss family Funariaceae
R Medina, M Johnson, Y Liu, N Wilding, TA Hedderson, N Wickett, ...
Molecular Phylogenetics and Evolution 120, 240-247, 2018
312018
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