| The emergence of adaptive laboratory evolution as an efficient tool for biological discovery and industrial biotechnology TE Sandberg, MJ Salazar, LL Weng, BO Palsson, AM Feist Metabolic Engineering 56, 1-16, 2019 | 421 | 2019 |
| Human protein arginine methyltransferase 7 (PRMT7) is a type III enzyme forming ω-NG-monomethylated arginine residues CI Zurita-Lopez, T Sandberg, R Kelly, SG Clarke Journal of Biological Chemistry 287 (11), 7859-7870, 2012 | 310 | 2012 |
| Use of adaptive laboratory evolution to discover key mutations enabling rapid growth of Escherichia coli K-12 MG1655 on glucose minimal medium RA LaCroix, TE Sandberg, EJ O'Brien, J Utrilla, A Ebrahim, GI Guzman, ... Applied and environmental microbiology 81 (1), 17-30, 2015 | 261 | 2015 |
| Evolution of Escherichia coli to 42 °C and Subsequent Genetic Engineering Reveals Adaptive Mechanisms and Novel Mutations TE Sandberg, M Pedersen, RA LaCroix, A Ebrahim, M Bonde, ... Molecular biology and evolution 31 (10), 2647-2662, 2014 | 185 | 2014 |
| Cellular responses to reactive oxygen species are predicted from molecular mechanisms L Yang, N Mih, A Anand, JH Park, J Tan, JT Yurkovich, JM Monk, CJ Lloyd, ... Proceedings of the National Academy of Sciences 116 (28), 14368-14373, 2019 | 101 | 2019 |
| Laboratory evolution to alternating substrate environments yields distinct phenotypic and genetic adaptive strategies TE Sandberg, CJ Lloyd, BO Palsson, AM Feist Applied and environmental microbiology 83 (13), e00410-17, 2017 | 101 | 2017 |
| Evolution of gene knockout strains of E. coli reveal regulatory architectures governed by metabolism D McCloskey, S Xu, TE Sandberg, E Brunk, Y Hefner, R Szubin, AM Feist, ... Nature communications 9 (1), 3796, 2018 | 70 | 2018 |
| Enzyme promiscuity shapes adaptation to novel growth substrates GI Guzmán, TE Sandberg, RA LaCroix, Á Nyerges, H Papp, M de Raad, ... Molecular systems biology 15 (4), e8462, 2019 | 67 | 2019 |
| Evolution of E. coli on [U-13C]Glucose Reveals a Negligible Isotopic Influence on Metabolism and Physiology TE Sandberg, CP Long, JE Gonzalez, AM Feist, MR Antoniewicz, ... PLoS One 11 (3), e0151130, 2016 | 65 | 2016 |
| OxyR is a convergent target for mutations acquired during adaptation to oxidative stress-prone metabolic states A Anand, K Chen, E Catoiu, AV Sastry, CA Olson, TE Sandberg, Y Seif, ... Molecular biology and evolution 37 (3), 660-667, 2020 | 58 | 2020 |
| Adaptive laboratory evolution resolves energy depletion to maintain high aromatic metabolite phenotypes in Escherichia coli strains lacking the phosphotransferase system D McCloskey, S Xu, TE Sandberg, E Brunk, Y Hefner, R Szubin, AM Feist, ... Metabolic engineering 48, 233-242, 2018 | 47 | 2018 |
| Laboratory evolution reveals a two-dimensional rate-yield tradeoff in microbial metabolism C Cheng, EJ O’brien, D McCloskey, J Utrilla, C Olson, RA LaCroix, ... PLoS computational biology 15 (6), e1007066, 2019 | 41 | 2019 |
| Adaptation to the coupling of glycolysis to toxic methylglyoxal production in tpiA deletion strains of Escherichia coli requires synchronized and counterintuitive genetic changes D McCloskey, S Xu, TE Sandberg, E Brunk, Y Hefner, R Szubin, AM Feist, ... Metabolic engineering 48, 82-93, 2018 | 41 | 2018 |
| Growth Adaptation of gnd and sdhCB Escherichia coli Deletion Strains Diverges From a Similar Initial Perturbation of the Transcriptome D McCloskey, S Xu, TE Sandberg, E Brunk, Y Hefner, R Szubin, AM Feist, ... Frontiers in microbiology 9, 1793, 2018 | 31 | 2018 |
| Multiple optimal phenotypes overcome redox and glycolytic intermediate metabolite imbalances in Escherichia coli pgi knockout evolutions D McCloskey, S Xu, TE Sandberg, E Brunk, Y Hefner, R Szubin, AM Feist, ... Applied and environmental microbiology, 342709, 2018 | 30 | 2018 |
| The genetic basis for adaptation of model-designed syntrophic co-cultures CJ Lloyd, ZA King, TE Sandberg, Y Hefner, CA Olson, PV Phaneuf, ... PLoS computational biology 15 (3), e1006213, 2019 | 27 | 2019 |
| Causal mutations from adaptive laboratory evolution are outlined by multiple scales of genome annotations and condition-specificity PV Phaneuf, JT Yurkovich, D Heckmann, M Wu, TE Sandberg, ZA King, ... BMC genomics 21, 1-16, 2020 | 25 | 2020 |
| Pseudogene repair driven by selection pressure applied in experimental evolution A Anand, CA Olson, L Yang, AV Sastry, E Catoiu, KS Choudhary, ... Nature microbiology 4 (3), 386-389, 2019 | 23 | 2019 |
| The Bitome: digitized genomic features reveal fundamental genome organization CR Lamoureux, KS Choudhary, ZA King, TE Sandberg, Y Gao, AV Sastry, ... Nucleic Acids Research 48 (18), 10157-10163, 2020 | 16 | 2020 |
| Bacterial fitness landscapes stratify based on proteome allocation associated with discrete aero-types K Chen, A Anand, C Olson, TE Sandberg, Y Gao, N Mih, BO Palsson PLoS computational biology 17 (1), e1008596, 2021 | 15 | 2021 |
