Matthew Jenior
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Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system
PD Schloss, ML Jenior, CC Koumpouras, SL Westcott, SK Highlander
PeerJ 4, e1869, 2016
Clostridium difficile Colonizes Alternative Nutrient Niches during Infection across Distinct Murine Gut Microbiomes
ML Jenior, JL Leslie, VB Young, PD Schloss
MSystems 2 (4), 10.1128/msystems. 00063-17, 2017
Clostridium difficile Alters the Structure and Metabolism of Distinct Cecal Microbiomes during Initial Infection To Promote Sustained Colonization
ML Jenior, JL Leslie, VB Young, PD Schloss
Msphere 3 (3), 10.1128/msphere. 00261-18, 2018
Enterococci enhance Clostridioides difficile pathogenesis
AB Smith, ML Jenior, O Keenan, JL Hart, J Specker, A Abbas, PC Rangel, ...
Nature 611 (7937), 780-786, 2022
Intra-and interindividual variations mask interspecies variation in the microbiota of sympatric Peromyscus populations
NT Baxter, JJ Wan, AM Schubert, ML Jenior, P Myers, PD Schloss
Applied and Environmental Microbiology 81 (1), 396-404, 2015
Transcriptome-guided parsimonious flux analysis improves predictions with metabolic networks in complex environments
ML Jenior, TJ Moutinho Jr, BV Dougherty, JA Papin
PLoS computational biology 16 (4), e1007099, 2020
The gut microbiota is associated with clearance of Clostridium difficile infection independent of adaptive immunity.
JL Leslie, KC Vendrov, ML Jenior, VB Young
Protection from lethal Clostridioides difficile infection via intraspecies competition for cogerminant
JL Leslie, ML Jenior, KC Vendrov, AK Standke, MR Barron, TJ O’Brien, ...
Mbio 12 (2), 10.1128/mbio. 00522-21, 2021
Novel drivers of virulence in Clostridioides difficile identified via context-specific metabolic network analysis
ML Jenior, JL Leslie, DA Powers, EM Garrett, KA Walker, ME Dickenson, ...
Msystems 6 (5), 10.1128/msystems. 00919-21, 2021
Ten simple rules to increase computational skills among biologists with Code Clubs
AK Hagan, NA Lesniak, MJ Balunas, L Bishop, WL Close, MD Doherty, ...
PLOS Computational Biology 16 (8), e1008119, 2020
16S rRNA sequencing with the Illumina MiSeq: library generation, QC, & sequencing
J Kozich, P Schloss, N Baxter, M Jenior, C Koumpouras, 2013
Reconstructor: a COBRApy compatible tool for automated genome-scale metabolic network reconstruction with parsimonious flux-based gap-filling
ML Jenior, EM Glass, JA Papin
Bioinformatics 39 (6), btad367, 2023
Genome-scale metabolic modeling reveals increased reliance on valine catabolism in clinical isolates of Klebsiella pneumoniae
ML Jenior, ME Dickenson, JA Papin
Npj Systems Biology and Applications 8 (1), 41, 2022
Lewis Blood Group Antigens are Associated with Altered Susceptibility to Shigellosis
JL Leslie, E Weddle, LK Yum, Y Lin, ML Jenior, B Lee, JZ Ma, ...
Clinical Infectious Diseases 1409, 2020
Multidimensional Clinical Surveillance of Pseudomonas aeruginosa Reveals Complex Relationships between Isolate Source, Morphology, and Antimicrobial Resistance
LJ Dunphy, GL Kolling, ML Jenior, J Carroll, AE Attai, F Farnoud, ...
Msphere 6 (4), 10.1128/msphere. 00393-21, 2021
Network analysis of toxin production in Clostridioides difficile identifies key metabolic dependencies
DA Powers, ML Jenior, GL Kolling, JA Papin
PLOS Computational Biology 19 (4), e1011076, 2023
Quantifying cumulative phenotypic and genomic evidence for procedural generation of metabolic network reconstructions
TJ Moutinho Jr, BC Neubert, ML Jenior, JA Papin
PLoS Computational Biology 18 (2), e1009341, 2022
Clostridioides difficile: Sometimes It Pays To Be Difficult
ML Jenior, JA Papin
Cell Host & Microbe 28 (3), 358-359, 2020
Functional Anabolic Network Analysis of Human-associated Lactobacillus Strains
TJ Moutinho Jr, BC Neubert, ML Jenior, MA Carey, GL Medlock, ...
bioRxiv, 746420, 2019
Identifying metabolic adaptations characteristic of cardiotoxicity using paired transcriptomics and metabolomics data integrated with a computational model of heart metabolism
BV Dougherty, CJ Moore, KD Rawls, ML Jenior, B Chun, S Nagdas, ...
PLOS Computational Biology 20 (2), e1011919, 2024
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