| Prokka: rapid prokaryotic genome annotation T Seemann Bioinformatics 30 (14), 2068-9, 2014 | 14749 | 2014 |
| SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments AJ Page, B Taylor, AJ Delaney, J Soares, T Seemann, JA Keane, ... Microbial genomics 2 (4), e000056, 2016 | 1104* | 2016 |
| Colistin Resistance in Acinetobacter baumannii Is Mediated by Complete Loss of Lipopolysaccharide Production JH Moffatt, M Harper, P Harrison, JDF Hale, E Vinogradov, T Seemann, ... Antimicrobial agents and chemotherapy 54 (12), 4971-4977, 2010 | 947 | 2010 |
| Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis TP Stinear, T Seemann, PF Harrison, GA Jenkin, JK Davies, ... Genome research 18 (5), 729-741, 2008 | 658 | 2008 |
| Snippy: rapid haploid variant calling and core SNP phylogeny T Seemann GitHub. Available at: github. com/tseemann/snippy, 2015 | 654* | 2015 |
| Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcer TP Stinear, T Seemann, S Pidot, W Frigui, G Reysset, T Garnier, ... Genome research 17 (2), 192-200, 2007 | 469 | 2007 |
| Genome reduction in Leptospira borgpetersenii reflects limited transmission potential DM Bulach, RL Zuerner, P Wilson, T Seemann, A McGrath, PA Cullen, ... Proceedings of the National Academy of Sciences 103 (39), 14560-14565, 2006 | 466 | 2006 |
| Abricate T Seemann | 460* | 2020 |
| Genome sequence of the saprophyte Leptospira biflexa provides insights into the evolution of Leptospira and the pathogenesis of leptospirosis M Picardeau, DM Bulach, C Bouchier, RL Zuerner, N Zidane, PJ Wilson, ... PloS one 3 (2), e1607, 2008 | 458 | 2008 |
| Evolution of Multidrug Resistance during Staphylococcus aureus Infection Involves Mutation of the Essential Two Component Regulator WalKR BP Howden, CRE McEvoy, DL Allen, K Chua, W Gao, PF Harrison, J Bell, ... PLoS pathogens 7 (11), e1002359, 2011 | 387 | 2011 |
| Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis P Supply, M Marceau, S Mangenot, D Roche, C Rouanet, V Khanna, ... Nature Genetics 45 (2), 172-179, 2013 | 357 | 2013 |
| Isolation and rapid sharing of the 2019 novel coronavirus (SARS‐CoV‐2) from the first patient diagnosed with COVID‐19 in Australia L Caly, J Druce, J Roberts, K Bond, T Tran, R Kostecki, Y Yoga, ... Medical Journal of Australia 212 (10), 459-462, 2020 | 356 | 2020 |
| Global spread of three multidrug-resistant lineages of Staphylococcus epidermidis JYH Lee, IR Monk, A Gonçalves da Silva, T Seemann, KYL Chua, ... Nature microbiology 3 (10), 1175-1185, 2018 | 264 | 2018 |
| Two Novel Point Mutations in Clinical Staphylococcus aureus Reduce Linezolid Susceptibility and Switch on the Stringent Response to Promote Persistent Infection W Gao, K Chua, JK Davies, HJ Newton, T Seemann, PF Harrison, ... PLoS pathogens 6 (6), e1000944, 2010 | 261 | 2010 |
| Colistin-resistant, lipopolysaccharide-deficient Acinetobacter baumannii responds to lipopolysaccharide loss through increased expression of genes involved in the synthesis and … R Henry, N Vithanage, P Harrison, T Seemann, S Coutts, JH Moffatt, ... Antimicrobial Agents and Chemotherapy 56 (1), AAC. 05191-11v1, 2012 | 248 | 2012 |
| Increasing tolerance of hospital Enterococcus faecium to handwash alcohols SJ Pidot, W Gao, AH Buultjens, IR Monk, R Guerillot, GP Carter, JYH Lee, ... Science translational medicine 10 (452), eaar6115, 2018 | 247 | 2018 |
| Human blood MAIT cell subsets defined using MR1 tetramers NA Gherardin, MNT Souter, HF Koay, KM Mangas, T Seemann, ... Immunology and cell biology 96 (5), 507-525, 2018 | 247 | 2018 |
| barrnap - rapid ribosomal RNA prediction T Seemann Google Scholar, 2013 | 243* | 2013 |
| Prospective whole-genome sequencing enhances national surveillance of Listeria monocytogenes JC Kwong, K Mercoulia, T Tomita, M Easton, HY Li, DM Bulach, ... Journal of clinical microbiology 54 (2), 333-342, 2016 | 232 | 2016 |
| A Major Role for Mammals in the Ecology of Mycobacterium ulcerans JAM Fyfe, CJ Lavender, KA Handasyde, AR Legione, CR O'Brien, ... PLoS neglected tropical diseases 4 (8), e791, 2010 | 232 | 2010 |
Tim StinearProfessor, University of MelbourneVerified email at unimelb.edu.au
