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Yunfeng Yang
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Molecular ecological network analyses
Y Deng, YH Jiang, Y Yang, Z He, F Luo, J Zhou
BMC bioinformatics 13, 1-20, 2012
19592012
Phylogenetic Molecular Ecological Network of Soil Microbial Communities in Response to Elevated CO2
J Zhou, Y Deng, F Luo, Z He, Y Yang
MBio 2 (4), 10.1128/mbio. 00122-11, 2011
7592011
Climate warming enhances microbial network complexity and stability
MM Yuan, X Guo, L Wu, YA Zhang, N Xiao, D Ning, Z Shi, X Zhou, L Wu, ...
Nature Climate Change 11 (4), 343-348, 2021
6392021
Stochasticity, succession, and environmental perturbations in a fluidic ecosystem
J Zhou, YE Deng, P Zhang, K Xue, Y Liang, JD Van Nostrand, Y Yang, ...
Proceedings of the National Academy of Sciences 111 (9), E836-E845, 2014
6372014
Global diversity and biogeography of bacterial communities in wastewater treatment plants
L Wu, D Ning, B Zhang, Y Li, P Zhang, X Shan, Q Zhang, MR Brown, Z Li, ...
Nature microbiology 4 (7), 1183-1195, 2019
5142019
Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China
S Jiao, Y Yang, Y Xu, J Zhang, Y Lu
The ISME Journal 14 (1), 202-216, 2020
5072020
Temperature mediates continental-scale diversity of microbes in forest soils
J Zhou, YE Deng, L Shen, C Wen, Q Yan, D Ning, Y Qin, K Xue, L Wu, ...
Nature communications 7 (1), 12083, 2016
5032016
Reproducibility and quantitation of amplicon sequencing-based detection
J Zhou, L Wu, Y Deng, X Zhi, YH Jiang, Q Tu, J Xie, JD Van Nostrand, ...
The ISME journal 5 (8), 1303-1313, 2011
4352011
A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming
D Ning, M Yuan, L Wu, Y Zhang, X Guo, X Zhou, Y Yang, AP Arkin, ...
Nature communications 11 (1), 4717, 2020
4182020
High-throughput metagenomic technologies for complex microbial community analysis: open and closed formats
J Zhou, Z He, Y Yang, Y Deng, SG Tringe, L Alvarez-Cohen
MBio 6 (1), 10.1128/mbio. 02288-14, 2015
3962015
Metabolic engineering of Clostridium cellulolyticum for production of isobutanol from cellulose
W Higashide, Y Li, Y Yang, JC Liao
Applied and environmental microbiology 77 (8), 2727-2733, 2011
3322011
Network succession reveals the importance of competition in response to emulsified vegetable oil amendment for uranium bioremediation
Y Deng, P Zhang, Y Qin, Q Tu, Y Yang, Z He, CW Schadt, J Zhou
Environmental Microbiology 18 (1), 205-218, 2016
3312016
Stochastic assembly leads to alternative communities with distinct functions in a bioreactor microbial community
J Zhou, W Liu, Y Deng, YH Jiang, K Xue, Z He, JD Van Nostrand, L Wu, ...
MBio 4 (2), 10.1128/mbio. 00584-12, 2013
2992013
The microbial gene diversity along an elevation gradient of the Tibetan grassland
Y Yang, Y Gao, S Wang, D Xu, H Yu, L Wu, Q Lin, Y Hu, X Li, Z He, ...
The ISME journal 8 (2), 430-440, 2014
2852014
Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory
F Luo, Y Yang, J Zhong, H Gao, L Khan, DK Thompson, J Zhou
BMC bioinformatics 8 (1), 1-17, 2007
2832007
Responses of the functional structure of soil microbial community to livestock grazing in the T ibetan alpine grassland
Y Yang, L Wu, Q Lin, M Yuan, D Xu, H Yu, Y Hu, J Duan, X Li, Z He, K Xue, ...
Global change biology 19 (2), 637-648, 2013
2752013
Climate warming leads to divergent succession of grassland microbial communities
X Guo, J Feng, Z Shi, X Zhou, M Yuan, X Tao, L Hale, T Yuan, J Wang, ...
Nature Climate Change 8 (9), 813-818, 2018
2392018
Modular organization of protein interaction networks
F Luo, Y Yang, CF Chen, R Chang, J Zhou, RH Scheuermann
Bioinformatics 23 (2), 207-214, 2007
2232007
Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity
R Tian, D Ning, Z He, P Zhang, SJ Spencer, S Gao, W Shi, L Wu, Y Zhang, ...
Microbiome 8, 1-15, 2020
2072020
Nopp140 functions as a molecular link between the nucleolus and the coiled bodies
C Isaac, Y Yang, U Thomas Meier
The Journal of cell biology 142 (2), 319-329, 1998
1991998
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Articles 1–20