| Fundamental identifiability limits in molecular epidemiology S Louca, A McLaughlin, A MacPherson, JB Joy, MW Pennell Molecular biology and evolution 38 (9), 4010-4024, 2021 | 36 | 2021 |
| Unifying phylogenetic birth–death models in epidemiology and macroevolution A MacPherson, S Louca, A McLaughlin, JB Joy, MW Pennell Systematic Biology 71 (1), 172-189, 2022 | 34 | 2022 |
| Genomic epidemiology of the first two waves of SARS-CoV-2 in Canada A McLaughlin, V Montoya, RL Miller, GJ Mordecai, C COVID, M Worobey, ... Elife 11, e73896, 2022 | 19 | 2022 |
| Detection of HIV transmission hotspots in British Columbia, Canada: A novel framework for the prioritization and allocation of treatment and prevention resources A McLaughlin, P Sereda, N Oliveira, R Barrios, CJ Brumme, ZL Brumme, ... EBioMedicine 48, 405-413, 2019 | 9 | 2019 |
| Impact of SARS-CoV-2 lockdown on expansion of HIV transmission clusters among key populations: A retrospective phylogenetic analysis RL Miller, A McLaughlin, V Montoya, J Toy, S Stone, J Harding, RH Liang, ... The Lancet Regional Health–Americas 16, 2022 | 8 | 2022 |
| A general birth-death-sampling model for epidemiology and macroevolution A MacPherson, S Louca, A McLaughlin, JB Joy, MW Pennell bioRxiv, 2020.10. 10.334383, 2020 | 8 | 2020 |
| Early and ongoing importations of SARS-CoV-2 in Canada A McLaughlin, V Montoya, RL Miller, GJ Mordecai, M Worobey, AFY Poon, ... Medrxiv, 2021.04. 09.21255131, 2021 | 7 | 2021 |
| Concordance of HIV transmission risk factors elucidated using viral diversification rate and phylogenetic clustering A McLaughlin, P Sereda, CJ Brumme, ZL Brumme, R Barrios, ... Evolution, Medicine, and Public Health 9 (1), 338-348, 2021 | 7 | 2021 |
| Variable routes to genomic and host adaptation among coronaviruses V Montoya, A McLaughlin, GJ Mordecai, RL Miller, JB Joy Journal of Evolutionary Biology 34 (6), 924-936, 2021 | 6 | 2021 |
| Phylogenetic prioritization of HIV-1 transmission clusters with viral lineage-level diversification rates RL Miller, A McLaughlin, RH Liang, J Harding, J Wong, AQ Le, ... Evolution, medicine, and public health 10 (1), 305-315, 2022 | 3 | 2022 |
| Avian influenza viruses in wild birds in Canada following incursion of the highly pathogenic H5N1 virus from Eurasia in 2021/2022 JA Giacinti, AV Signore, MEB Jones, L Bourque, S Lair, C Jardine, ... bioRxiv, 2023.11. 23.565566, 2023 | 2 | 2023 |
| Association of Alcohol Consumption With CD4 Recovery After Antiretroviral Therapy Initiation in St. Petersburg, Russia A McLaughlin, N Lin, W Jiang, S Lodi, D Lioznov, G Patts, N Gnatienko, ... JAIDS Journal of Acquired Immune Deficiency Syndromes 94 (3), 244-252, 2023 | | 2023 |
| Effectiveness of Canadian travel restrictions in reducing burden of SARS-CoV-2 variants of concern (preprint) A McLaughlin, V Montoya, RL Miller, C COVID, M Worobey, JB Joy | | 2023 |
| Effectiveness of Canadian travel restrictions in reducing burden of SARS-CoV-2 variants of concern A McLaughlin, V Montoya, RL Miller, ... medRxiv, 2023.09. 12.23294140, 2023 | | 2023 |
| 333. Comparing COVID-19-related Morbidity and Mortality between Patients with and without Substance Use Disorder: A Retrospective Cohort Study A McLaughlin, R Burns, M Ryan, SA Assoumou Open Forum Infectious Diseases 8 (Suppl 1), S272, 2021 | | 2021 |
| Early and ongoing importations of SARS-CoV-2 in Canada (preprint) A McLaughlin, V Montoya, RL Miller, GJ Mordecai, M Worobey, A Poon, ... | | 2021 |
| Epidemiological Correlates of HIV Lineage-Level Diversification Rate A McLaughlin | | 2019 |
| Applying phylogenetic lineage-level diversification rate to infer epidemiological risk factors and spatiotemporal distribution of HIV transmission in British Columbia A McLaughlin University of British Columbia, 2019 | | 2019 |
| A General Birth-Death-Sampling Model for Epidemiology and Macroevolution A MacPherson, S Louca, A McLaughlin, JB Joy, MW Pennell | | |
| A Phylogenetic Approach to Prioritizing HIV Transmission Clusters J Joy, A McLaughlin, RH Liang, J Choi, CJ Brumme, JSG Montaner | | |
