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Nick Croucher
Nick Croucher
Verified email at imperial.ac.uk
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Year
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
NJ Croucher, AJ Page, TR Connor, AJ Delaney, JA Keane, SD Bentley, ...
Nucleic acids research 43 (3), e15-e15, 2015
21562015
Rapid pneumococcal evolution in response to clinical interventions
NJ Croucher, SR Harris, C Fraser, MA Quail, J Burton, M van der Linden, ...
Science 331 (6016), 430-434, 2011
10132011
Evidence for several waves of global transmission in the seventh cholera pandemic
A Mutreja, DW Kim, NR Thomson, TR Connor, JH Lee, S Kariuki, ...
Nature 477 (7365), 462-465, 2011
8302011
Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak
CU Köser, MTG Holden, MJ Ellington, EJP Cartwright, NM Brown, ...
New England Journal of Medicine 366 (24), 2267-2275, 2012
7982012
Phandango: an interactive viewer for bacterial population genomics
J Hadfield, NJ Croucher, RJ Goater, K Abudahab, DM Aanensen, ...
Bioinformatics 34 (2), 292-293, 2017
5702017
Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species
C Donati, NL Hiller, H Tettelin, A Muzzi, NJ Croucher, SV Angiuoli, ...
Genome biology 11 (10), R107, 2010
4362010
Antibiotic treatment of Clostridium difficile carrier mice triggers a supershedder state, spore-mediated transmission, and severe disease in immunocompromised hosts
TD Lawley, S Clare, AW Walker, D Goulding, RA Stabler, N Croucher, ...
Infection and immunity 77 (9), 3661-3669, 2009
4362009
Dense genomic sampling identifies highways of pneumococcal recombination
C Chewapreecha, SR Harris, NJ Croucher, C Turner, P Marttinen, ...
Nature genetics 46 (3), 305, 2014
4142014
Population genomics of post-vaccine changes in pneumococcal epidemiology
NJ Croucher, JA Finkelstein, SI Pelton, PK Mitchell, GM Lee, J Parkhill, ...
Nature genetics 45 (6), 656, 2013
4022013
Studying bacterial transcriptomes using RNA-seq
NJ Croucher, NR Thomson
Current opinion in microbiology 13 (5), 619-624, 2010
3752010
Fast and flexible bacterial genomic epidemiology with PopPUNK
JA Lees, SR Harris, G Tonkin-Hill, RA Gladstone, SW Lo, JN Weiser, ...
Genome research 29 (2), 304-316, 2019
3232019
Proteomic and genomic characterization of highly infectious Clostridium difficile 630 spores
TD Lawley, NJ Croucher, L Yu, S Clare, M Sebaihia, D Goulding, ...
Journal of bacteriology 191 (17), 5377-5386, 2009
3052009
Sequence-based analysis uncovers an abundance of non-coding RNA in the total transcriptome of Mycobacterium tuberculosis
KB Arnvig, I Comas, NR Thomson, J Houghton, HI Boshoff, NJ Croucher, ...
PLoS Pathog 7 (11), e1002342, 2011
2882011
A strand-specific RNA–Seq analysis of the transcriptome of the typhoid bacillus salmonella typhi
TT Perkins, RA Kingsley, MC Fookes, PP Gardner, KD James, L Yu, ...
PLoS genetics 5 (7), e1000569, 2009
2842009
Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis
MTG Holden, H Hauser, M Sanders, TH Ngo, I Cherevach, A Cronin, ...
PLoS One 4 (7), e6072, 2009
2802009
Comprehensive identification of single nucleotide polymorphisms associated with beta-lactam resistance within pneumococcal mosaic genes
C Chewapreecha, P Marttinen, NJ Croucher, SJ Salter, SR Harris, ...
PLoS Genet 10 (8), e1004547, 2014
2352014
Pneumococcal capsular switching: a historical perspective
KL Wyres, LM Lambertsen, NJ Croucher, L McGee, A von Gottberg, ...
Journal of Infectious Diseases 207 (3), 439-449, 2013
2342013
Bayesian inference of ancestral dates on bacterial phylogenetic trees
X Didelot, NJ Croucher, SD Bentley, SR Harris, DJ Wilson
Nucleic acids research 46 (22), e134-e134, 2018
2282018
Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes
JA Lees, M Vehkala, N Välimäki, SR Harris, C Chewapreecha, ...
Nature Communications 7, 12797, 2016
2252016
Detection of recombination events in bacterial genomes from large population samples
P Marttinen, WP Hanage, NJ Croucher, TR Connor, SR Harris, ...
Nucleic acids research 40 (1), e6-e6, 2011
2232011
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