Bui Quang Minh (Minh Bùi)

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Arndt von HaeselerMax Perutz Labs University of Vienna, Medical University of ViennaVerified email at univie.ac.at
Robert LanfearProfessor, Australian National UniversityVerified email at anu.edu.au
Heiko A. SchmidtCenter for Integrative Bioinformatics Vienna (CIBIV)Verified email at univie.ac.at
Olga ChernomorBoehringer IngelheimVerified email at boehringer-ingelheim.com
Le Sy VinhAsso. Prof. of Computer Science, VNU University of Engineering and TechnologyVerified email at vnu.edu.vn
Dominik SchrempfDept. Biological Physics, Eötvös Loránd University, Budapest, HungaryVerified email at caesar.elte.hu
Thomas King-Fung WongANUVerified email at anu.edu.au
Lam-Tung NguyenCenter for Integrative Bioinformatics Vienna, University of ViennaVerified email at univie.ac.at
Diep Thi HoangVNU University of Engineering and TechnologyVerified email at vnu.edu.vn
Lars S JermiinHonorary Professor, Australian National UniversityVerified email at anu.edu.au
Subha KalyaanamoorthyAssistant Professor, Department of Chemistry, University of WaterlooVerified email at uwaterloo.ca
Steffen KlaereDefinity Financial, Waterloo, CanadaVerified email at auckland.ac.nz
Matthew W. HahnDistinguished Professor of Biology and Computer Science, Indiana UniversityVerified email at indiana.edu
Nicola De MaioScientist in Molecular Evolution, European Bioinformatic Institute (EMBL-EBI), CambridgeVerified email at ebi.ac.uk
Suha Naser-KhdourUniversity of BaselVerified email at unibas.ch
Alexandros StamatakisFoundation for Research and Technology - Hellas, HITS gGmbH, KITVerified email at ics.forth.gr
Andrew RogerProfessor of Biochemistry and Molecular Biology, Dalhousie UnviersityVerified email at dal.ca
Edward SuskoProfessor of Statistics, Dalhousie UniversityVerified email at dal.ca
Nick GoldmanEMBL-European Bioinformatics InstituteVerified email at ebi.ac.uk
Karl-Erich JaegerProfessor für Mikrobiologie, Universität DüsseldorfVerified email at fz-juelich.de

Bui Quang Minh (Minh Bùi)

Associate Professor, Australian National University

Verified email at anu.edu.au - Homepage

Bioinformatics Molecular Evolution Phylogenetics Phylogenomics High Performance Computing


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IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies LT Nguyen, HA Schmidt, A von Haeseler, BQ Minh Molecular biology and evolution 32 (1), 268-274, 2015	20730	2015
ModelFinder: fast model selection for accurate phylogenetic estimates S Kalyaanamoorthy, BQ Minh, TKF Wong, A Von Haeseler, LS Jermiin Nature methods 14 (6), 587-589, 2017	12525	2017
IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era BQ Minh, HA Schmidt, O Chernomor, D Schrempf, MD Woodhams, ... Molecular biology and evolution 37 (5), 1530-1534, 2020	9020	2020
UFBoot2: improving the ultrafast bootstrap approximation DT Hoang, O Chernomor, A Von Haeseler, BQ Minh, LS Vinh Molecular biology and evolution 35 (2), 518-522, 2018	7683	2018
W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis J Trifinopoulos, LT Nguyen, A von Haeseler, BQ Minh Nucleic acids research 44 (W1), W232-W235, 2016	4255	2016
Ultrafast approximation for phylogenetic bootstrap BQ Minh, MAT Nguyen, A Von Haeseler Molecular biology and evolution 30 (5), 1188-1195, 2013	3901	2013
Terrace aware data structure for phylogenomic inference from supermatrices O Chernomor, A Von Haeseler, BQ Minh Systematic biology 65 (6), 997-1008, 2016	1819	2016
New methods to calculate concordance factors for phylogenomic datasets BQ Minh, MW Hahn, R Lanfear Molecular biology and evolution 37 (9), 2727-2733, 2020	497	2020
Modeling site heterogeneity with posterior mean site frequency profiles accelerates accurate phylogenomic estimation HC Wang, BQ Minh, E Susko, AJ Roger Systematic biology 67 (2), 216-235, 2018	377	2018
Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes RJE Alves, BQ Minh, T Urich, A von Haeseler, C Schleper Nature communications 9 (1), 1517, 2018	296	2018
Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista F Burki, M Kaplan, DV Tikhonenkov, V Zlatogursky, BQ Minh, ... Proceedings of the Royal Society B: Biological Sciences 283 (1823), 20152802, 2016	295	2016
MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation DT Hoang, LS Vinh, T Flouri, A Stamatakis, A von Haeseler, BQ Minh BMC evolutionary biology 18, 1-11, 2018	174	2018
GHOST: recovering historical signal from heterotachously evolved sequence alignments SM Crotty, BQ Minh, NG Bean, BR Holland, J Tuke, LS Jermiin, ... Systematic biology 69 (2), 249-264, 2020	151	2020
Distribution and phylogeny of light-oxygen-voltage-blue-light-signaling proteins in the three kingdoms of life U Krauss, BQ Minh, A Losi, W Gärtner, T Eggert, A von Haeseler, ... Journal of bacteriology 191 (23), 7234-7242, 2009	139	2009
The prevalence and impact of model violations in phylogenetic analysis S Naser-Khdour, BQ Minh, W Zhang, EA Stone, R Lanfear Genome biology and evolution 11 (12), 3341-3352, 2019	137	2019
Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects E Dell’Ampio, K Meusemann, NU Szucsich, RS Peters, B Meyer, J Borner, ... Molecular biology and evolution 31 (1), 239-249, 2014	137	2014
Want to track pandemic variants faster? Fix the bioinformatics bottleneck EB Hodcroft, N De Maio, R Lanfear, DR MacCannell, BQ Minh, ... Nature 591 (7848), 30-33, 2021	111	2021
pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies BQ Minh, LS Vinh, A Von Haeseler, HA Schmidt Bioinformatics 21 (19), 3794-3796, 2005	105	2005
Undinarchaeota illuminate DPANN phylogeny and the impact of gene transfer on archaeal evolution N Dombrowski, TA Williams, J Sun, BJ Woodcroft, JH Lee, BQ Minh, ... Nature Communications 11 (1), 3939, 2020	90	2020
Primate phylogenomics uncovers multiple rapid radiations and ancient interspecific introgression D Vanderpool, BQ Minh, R Lanfear, D Hughes, S Murali, RA Harris, ... PLoS biology 18 (12), e3000954, 2020	86	2020

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