| New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0 S Guindon, JF Dufayard, V Lefort, M Anisimova, W Hordijk, O Gascuel Systematic biology 59 (3), 307-321, 2010 | 18271 | 2010 |
| Phylogeny. fr: robust phylogenetic analysis for the non-specialist A Dereeper, V Guignon, G Blanc, S Audic, S Buffet, F Chevenet, ... Nucleic acids research 36 (suppl_2), W465-W469, 2008 | 5605 | 2008 |
| Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes M Anisimova, M Gil, JF Dufayard, C Dessimoz, O Gascuel Systematic biology 60 (5), 685-699, 2011 | 1108 | 2011 |
| Estimating maximum likelihood phylogenies with PhyML S Guindon, F Delsuc, JF Dufayard, O Gascuel Bioinformatics for DNA sequence analysis, 113-137, 2009 | 911 | 2009 |
| The genome sequence of the orchid Phalaenopsis equestris J Cai, X Liu, K Vanneste, S Proost, WC Tsai, KW Liu, LJ Chen, Y He, Q Xu, ... Nature genetics 47 (1), 65-72, 2015 | 512 | 2015 |
| Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases JF Dufayard, L Duret, S Penel, M Gouy, F Rechenmann, G Perrière Bioinformatics 21 (11), 2596-2603, 2005 | 223 | 2005 |
| Databases of homologous gene families for comparative genomics S Penel, AM Arigon, JF Dufayard, AS Sertier, V Daubin, L Duret, M Gouy, ... BMC bioinformatics 10, 1-13, 2009 | 189 | 2009 |
| The banana genome hub G Droc, D Lariviere, V Guignon, N Yahiaoui, D This, O Garsmeur, ... Database 2013, bat035, 2013 | 185 | 2013 |
| Evolutionary dynamics of the leucine-rich repeat receptor-like kinase (LRR-RLK) subfamily in angiosperms I Fischer, A Diévart, G Droc, JF Dufayard, N Chantret Plant physiology 170 (3), 1595-1610, 2016 | 107 | 2016 |
| Identification of the Hevea brasiliensisAP2/ERF superfamily by RNA sequencing C Duan, X Argout, V Gébelin, M Summo, JF Dufayard, J Leclercq, ... BMC genomics 14, 1-22, 2013 | 95 | 2013 |
| New insights on leucine-rich repeats receptor-like kinase orthologous relationships in angiosperms JF Dufayard, M Bettembourg, I Fischer, G Droc, E Guiderdoni, C Périn, ... Frontiers in Plant Science 8, 381, 2017 | 89 | 2017 |
| PhyML: fast and accurate phylogeny reconstruction by maximum likelihood S Guindon, JF Dufayard, W Hordijk, V Lefort, O Gascuel Infection Genetics and Evolution 9 (3), 384-385, 2009 | 77 | 2009 |
| Some ethylene biosynthesis and AP2/ERF genes reveal a specific pattern of expression during somatic embryogenesis in Hevea brasiliensis P Piyatrakul, RA Putranto, F Martin, M Rio, F Dessailly, J Leclercq, ... BMC Plant Biology 12, 1-20, 2012 | 65 | 2012 |
| SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations A Dereeper, F Homa, G Andres, G Sempere, G Sarah, Y Hueber, ... Nucleic Acids Research 43 (W1), W295-W300, 2015 | 57 | 2015 |
| Genomicus in 2022: comparative tools for thousands of genomes and reconstructed ancestors NTT Nguyen, P Vincens, JF Dufayard, H Roest Crollius, A Louis Nucleic Acids Research 50 (D1), D1025-D1031, 2022 | 56 | 2022 |
| In silico analysis of usher encoding genes in Klebsiella pneumoniae and characterization of their role in adhesion and colonization F Khater, D Balestrino, N Charbonnel, JF Dufayard, S Brisse, C Forestier PloS one 10 (3), e0116215, 2015 | 56 | 2015 |
| Impact of recurrent gene duplication on adaptation of plant genomes I Fischer, J Dainat, V Ranwez, S Glémin, JF Dufayard, N Chantret BMC Plant Biology 14, 1-15, 2014 | 31 | 2014 |
| GreenPhylDB v5: a comparative pangenomic database for plant genomes V Guignon, A Toure, G Droc, JF Dufayard, M Conte, M Rouard Nucleic Acids Research 49 (D1), D1464-D1471, 2021 | 28 | 2021 |
| PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data L Bréhélin, JF Dufayard, O Gascuel BMC bioinformatics 9, 1-15, 2008 | 28 | 2008 |
| Transcriptional regulation of sorghum stem composition: key players identified through co-expression gene network and comparative genomics analyses L Hennet, A Berger, N Trabanco, E Ricciuti, JF Dufayard, S Bocs, ... Frontiers in plant science 11, 224, 2020 | 23 | 2020 |
Olivier GascuelCNRS & Muséum National d'Histoire NaturelleVerified email at mnhn.fr
