| Benchmarking DNA metabarcoding for biodiversity-based monitoring and assessment E Aylagas, Á Borja, X Irigoien, N Rodríguez-Ezpeleta Frontiers in Marine Science, 2016 | 247 | 2016 |
| Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap T Cordier, L Alonso‐Sáez, L Apothéloz‐Perret‐Gentil, E Aylagas, ... Molecular Ecology 30 (13), 2937-2958, 2021 | 229 | 2021 |
| Environmental Status Assessment Using DNA Metabarcoding: Towards a Genetics Based Marine Biotic Index (gAMBI) E Aylagas, Á Borja, N Rodríguez-Ezpeleta PLoS ONE, 2014 | 200 | 2014 |
| A bacterial community-based index to assess the ecological status of estuarine and coastal environments E Aylagas, Á Borja, M Tangherlini, A Dell'Anno, C Corinaldesi, CT Michell, ... Marine pollution bulletin 114 (2), 679-688, 2017 | 160 | 2017 |
| Adapting metabarcoding-based benthic biomonitoring into routine marine ecological status assessment networks E Aylagas, Á Borja, I Muxika, N Rodríguez-Ezpeleta Ecological Indicators 95, 194-202, 2018 | 158 | 2018 |
| Beyond the visual: using metabarcoding to characterize the hidden reef cryptobiome S Carvalho, E Aylagas, R Villalobos, Y Kattan, M Berumen, JK Pearman Proceedings of the Royal Society B 286 (1896), 20182697, 2019 | 84 | 2019 |
| Marine sediment sample pre-processing for macroinvertebrates metabarcoding: mechanical enrichment and homogenization E Aylagas, I Mendibil, Á Borja, N Rodríguez-Ezpeleta Frontiers in Marine Science 3, 203, 2016 | 49 | 2016 |
| Widespread diversity deficits of coral reef sharks and rays CA Simpfendorfer, MR Heithaus, MR Heupel, MA MacNeil, M Meekan, ... Science 380 (6650), 1155-1160, 2023 | 45 | 2023 |
| Disentangling the complex microbial community of coral reefs using standardized Autonomous Reef Monitoring Structures (ARMS) JK Pearman, E Aylagas, CR Voolstra, H Anlauf, R Villalobos, S Carvalho Molecular Ecology 28 (15), 3496-3507, 2019 | 45 | 2019 |
| Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life F Rimet, E Aylagas, A Borja, A Bouchez, A Canino, C Chauvin, ... Pensoft Publishers, 2021 | 42 | 2021 |
| Pan‐regional marine benthic cryptobiome biodiversity patterns revealed by metabarcoding Autonomous Reef Monitoring Structures JK Pearman, G Chust, E Aylagas, E Villarino, JR Watson, A Chenuil, ... Molecular Ecology 29 (24), 4882-4897, 2020 | 37 | 2020 |
| Translational molecular ecology in practice: linking DNA-based methods to actionable marine environmental management E Aylagas, A Borja, X Pochon, A Zaiko, N Keeley, K Bruce, P Hong, ... Science of the Total Environment 744, 140780, 2020 | 35 | 2020 |
| A step towards the validation of bacteria biotic indices using DNA metabarcoding for benthic monitoring E Aylagas, J Atalah, P Sánchez‐Jerez, JK Pearman, N Casado, J Asensi, ... Molecular ecology resources 21 (6), 1889-1903, 2021 | 33 | 2021 |
| Analysis of Illumina MiSeq metabarcoding data: application to benthic indices for environmental monitoring E Aylagas, N Rodríguez-Ezpeleta Marine Genomics, Methods and Protocols 1452, 2016 | 31 | 2016 |
| A synthesis of marine monitoring methods with the potential to enhance the status assessment of the Baltic Sea L Mack, J Attila, E Aylagas, A Beermann, A Borja, D Hering, M Kahlert, ... Frontiers in marine science 7, 552047, 2020 | 24 | 2020 |
| Contrasting effects of local environmental and biogeographic factors on the composition and structure of bacterial communities in arid monospecific mangrove soils T Thomson, M Fusi, MF Bennett-Smith, N Prinz, E Aylagas, S Carvalho, ... Microbiology spectrum 10 (1), e00903-21, 2022 | 20 | 2022 |
| A portfolio of climate‐tailored approaches to advance the design of marine protected areas in the Red Sea L Gajdzik, TM DeCarlo, E Aylagas, DJ Coker, AL Green, JE Majoris, ... Global Change Biology 27 (17), 3956-3968, 2021 | 20 | 2021 |
| Evaluation of marine phytoplankton toxicity by application of marine invertebrate bioassays E Aylagas, I Menchaca, A Laza Martínez, S Seoane Parra, J Franco Instituto de Ciencias del Mar, 2014 | 10 | 2014 |
| Hurdles and opportunities in implementing marine biosecurity systems in data-poor regions S Carvalho, H Shchepanik, E Aylagas, ML Berumen, FO Costa, ... BioScience 73 (7), 494-512, 2023 | 9 | 2023 |
| Inter-annual variability patterns of reef cryptobiota in the central Red Sea across a shelf gradient R Villalobos, E Aylagas, JK Pearman, J Curdia, D Lozano-Cortés, ... Scientific Reports 12 (1), 16944, 2022 | 9 | 2022 |
