Jaime Davila
Jaime Davila
Assistant Professor of Mathematics, Statistics and Computer Science, St Olaf College
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Inherited mutations in 17 breast cancer susceptibility genes among a large triple-negative breast cancer cohort unselected for family history of breast cancer
FJ Couch, SN Hart, P Sharma, AE Toland, X Wang, P Miron, JE Olson, ...
Journal of clinical oncology 33 (4), 304, 2015
MAP-RSeq: Mayo analysis pipeline for RNA sequencing
KR Kalari, AA Nair, JD Bhavsar, DR O’Brien, JI Davila, MA Bockol, J Nie, ...
BMC bioinformatics 15, 1-11, 2014
Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis
JI Davila, MP Arrieta-Montiel, Y Wamboldt, J Cao, J Hagmann, V Shedge, ...
BMC biology 9, 1-14, 2011
Diversity of the Arabidopsis mitochondrial genome occurs via nuclear-controlled recombination activity
MP Arrieta-Montiel, V Shedge, J Davila, AC Christensen, SA Mackenzie
Genetics 183 (4), 1261-1268, 2009
Clinical Characteristics of Ovarian Cancer Classified by BRCA1, BRCA2 and RAD51C Status
JM Cunningham, MS Cicek, NB Larson, J Davila, C Wang, MC Larson, ...
Scientific reports 4 (1), 4026, 2014
Fast and practical algorithms for planted (l, d) motif search
J Davila, S Balla, S Rajasekaran
IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (4), 544-552, 2007
MutS HOMOLOG1 is a nucleoid protein that alters mitochondrial and plastid properties and plant response to high light
YZ Xu, MP Arrieta-Montiel, KS Virdi, WBM de Paula, JR Widhalm, ...
The Plant Cell 23 (9), 3428-3441, 2011
IL‐33 facilitates oncogene‐induced cholangiocarcinoma in mice by an interleukin‐6‐sensitive mechanism
D Yamada, S Rizvi, N Razumilava, SF Bronk, JI Davila, MD Champion, ...
Hepatology 61 (5), 1627-1642, 2015
RNA toxicity and missplicing in the common eye disease fuchs endothelial corneal dystrophy
J Du, RA Aleff, E Soragni, K Kalari, J Nie, X Tang, J Davila, JP Kocher, ...
Journal of Biological Chemistry 290 (10), 5979-5990, 2015
Integrated mate-pair and RNA sequencing identifies novel, targetable gene fusions in peripheral T-cell lymphoma
RL Boddicker, GL Razidlo, S Dasari, Y Zeng, G Hu, RA Knudson, ...
Blood, The Journal of the American Society of Hematology 128 (9), 1234-1245, 2016
Gastroblastoma harbors a recurrent somatic MALAT1–GLI1 fusion gene
RP Graham, AA Nair, JI Davila, L Jin, J Jen, WR Sukov, TT Wu, ...
Modern Pathology 30 (10), 1443-1452, 2017
Development and characterization of human-induced pluripotent stem cell-derived cholangiocytes
TM De Assuncao, Y Sun, N Jalan-Sakrikar, MC Drinane, BQ Huang, Y Li, ...
Laboratory investigation 95 (6), 684-696, 2015
Extensive rearrangement of the Arabidopsis mitochondrial genome elicits cellular conditions for thermotolerance
V Shedge, J Davila, MP Arrieta-Montiel, S Mohammed, SA Mackenzie
Plant physiology 152 (4), 1960-1970, 2010
Recurrent STAT3-JAK2 fusions in indolent T-cell lymphoproliferative disorder of the gastrointestinal tract
A Sharma, N Oishi, RL Boddicker, G Hu, HK Benson, RP Ketterling, ...
Blood, The Journal of the American Society of Hematology 131 (20), 2262-2266, 2018
Contraction of T cell richness in lung cancer brain metastases
AS Mansfield, H Ren, S Sutor, V Sarangi, A Nair, J Davila, LR Elsbernd, ...
Scientific reports 8 (1), 2171, 2018
Spindle cell rhabdomyosarcoma of bone with FUS–TFCP2 fusion: confirmation of a very recently described rhabdomyosarcoma subtype
NK Dashti, RN Wehrs, BC Thomas, A Nair, J Davila, JC Buckner, ...
Histopathology 73 (3), 514-520, 2018
Cytoplasmic Male Sterility-Associated Chimeric Open Reading Frames Identified by Mitochondrial Genome Sequencing of Four Cajanus Genotypes
R Tuteja, RK Saxena, J Davila, T Shah, W Chen, YLI Xiao, G Fan, ...
DNA research 20 (5), 485-495, 2013
Space and time efficient algorithms for planted motif search
J Davila, S Balla, S Rajasekaran
Computational Science–ICCS 2006: 6th International Conference, Reading, UK …, 2006
Novel TRAF1‐ALK fusion identified by deep RNA sequencing of anaplastic large cell lymphoma
AL Feldman, G Vasmatzis, YW Asmann, J Davila, S Middha, BW Eckloff, ...
Genes, Chromosomes and Cancer 52 (11), 1097-1102, 2013
qPMS7: A fast algorithm for finding (ℓ, d)-motifs in DNA and protein sequences
H Dinh, S Rajasekaran, J Davila
PloS one 7 (7), e41425, 2012
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