Daniel Buchan
Daniel Buchan
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Cited by
Cited by
The tomato genome sequence provides insights into fleshy fruit evolution
xx Tomato Genome Consortium
Nature 485 (7400), 635, 2012
Scalable web services for the PSIPRED Protein Analysis Workbench
DWA Buchan, F Minneci, TCO Nugent, K Bryson, DT Jones
Nucleic acids research 41 (W1), W349-W357, 2013
The PSIPRED protein analysis workbench: 20 years on
DWA Buchan, DT Jones
Nucleic acids research 47 (W1), W402-W407, 2019
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments
DT Jones, DWA Buchan, D Cozzetto, M Pontil
Bioinformatics 28 (2), 184-190, 2012
Protein annotation and modelling servers at University College London
DWA Buchan, SM Ward, AE Lobley, TCO Nugent, K Bryson, DT Jones
Nucleic acids research 38 (suppl_2), W563-W568, 2010
Predictions of hot spot residues at protein-protein interfaces using support vector machines
S Lise, D Buchan, M Pontil, DT Jones
PLoS one 6 (2), e16774, 2011
Evolution of protein superfamilies and bacterial genome size
JAG Ranea, DWA Buchan, JM Thornton, CA Orengo
Journal of molecular biology 336 (4), 871-887, 2004
The CATH protein family database: a resource for structural and functional annotation of genomes
CA Orengo, JE Bray, DWA Buchan, A Harrison, D Lee, FMG Pearl, ...
PROTEOMICS: International Edition 2 (1), 11-21, 2002
A snapshot of the emerging tomato genome sequence
LAL Mueller, RK Tanksley, SD Giovannoni, JJ White, R Vrebalov, J Fei, ...
The Plant Genome 2 (1), 78, 2009
Gene3D: structural assignment for whole genes and genomes using the CATH domain structure database
DWA Buchan, AJ Shepherd, D Lee, FMG Pearl, SCG Rison, JM Thornton, ...
Genome research 12 (3), 503-514, 2002
A rapid classification protocol for the CATH Domain Database to support structural genomics
FMG Pearl, N Martin, JE Bray, DWA Buchan, AP Harrison, D Lee, ...
Nucleic Acids Research 29 (1), 223-227, 2001
Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains
TE Lewis, I Sillitoe, A Andreeva, TL Blundell, DWA Buchan, C Chothia, ...
Nucleic acids research 41 (D1), D499-D507, 2012
The CATH extended protein‐family database: Providing structural annotations for genome sequences
FMG Pearl, D Lee, JE Bray, DWA Buchan, AJ Shepherd, CA Orengo
Protein Science 11 (2), 233-244, 2002
Improved protein contact predictions with the MetaPSICOV2 server in CASP12
DWA Buchan, DT Jones
PROTEINS: structure, function, and bioinformatics 86, 78-83, 2018
EigenTHREADER: analogous protein fold recognition by efficient contact map threading
DWA Buchan, DT Jones
Bioinformatics 33 (17), 2684-2690, 2017
Genome3D: exploiting structure to help users understand their sequences
TE Lewis, I Sillitoe, A Andreeva, TL Blundell, DWA Buchan, C Chothia, ...
Nucleic Acids Research 43 (D1), D382-D386, 2015
A structural perspective on genome evolution
D Lee, A Grant, D Buchan, C Orengo
Current opinion in structural biology 13 (3), 359-369, 2003
Gene3D: structural assignments for the biologist and bioinformaticist alike
DWA Buchan, SCG Rison, JE Bray, D Lee, F Pearl, JM Thornton, ...
Nucleic acids research 31 (1), 469-473, 2003
Learning a functional grammar of protein domains using natural language word embedding techniques
DWA Buchan, DT Jones
Proteins: Structure, function, and bioinformatics 88 (4), 616-624, 2020
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