John R. Spear
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat
RE Ley, JK Harris, J Wilcox, JR Spear, SR Miller, BM Bebout, JA Maresca, ...
Applied and environmental microbiology 72 (5), 3685-3695, 2006
Sulfate reducing bacteria in microbial mats: changing paradigms, new discoveries
LK Baumgartner, RP Reid, C Dupraz, AW Decho, DH Buckley, JR Spear, ...
Sedimentary Geology 185 (3-4), 131-145, 2006
Hydrogen and bioenergetics in the Yellowstone geothermal ecosystem
JR Spear, JJ Walker, TM McCollom, NR Pace
Proceedings of the National Academy of Sciences 102 (7), 2555-2560, 2005
BugBase predicts organism-level microbiome phenotypes
T Ward, J Larson, J Meulemans, B Hillmann, J Lynch, D Sidiropoulos, ...
BioRxiv, 133462, 2017
Bacterial diversity and sulfur cycling in a mesophilic sulfide-rich spring
MS Elshahed, JM Senko, FZ Najar, SM Kenton, BA Roe, TA Dewers, ...
Applied and Environmental Microbiology 69 (9), 5609-5621, 2003
Influence of sulfate reducing bacterial biofilm on corrosion behavior of low-alloy, high-strength steel (API-5L X80)
FM AlAbbas, C Williamson, SM Bhola, JR Spear, DL Olson, B Mishra, ...
International Biodeterioration & Biodegradation 78, 34-42, 2013
Geobiology of a microbial endolithic community in the Yellowstone geothermal environment
JJ Walker, JR Spear, NR Pace
Nature 434 (7036), 1011-1014, 2005
Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat
J Kirk Harris, J Gregory Caporaso, JJ Walker, JR Spear, NJ Gold, ...
The ISME journal 7 (1), 50-60, 2013
Phylogenetic diversity and ecology of environmental Archaea
CE Robertson, JK Harris, JR Spear, NR Pace
Current opinion in microbiology 8 (6), 638-642, 2005
Millimeter‐scale genetic gradients and community‐level molecular convergence in a hypersaline microbial mat
V Kunin, J Raes, JK Harris, JR Spear, JJ Walker, N Ivanova, ...
Molecular systems biology 4 (1), 198, 2008
Modeling reduction of uranium U (VI) under variable sulfate concentrations by sulfate-reducing bacteria
JR Spear, LA Figueroa, BD Honeyman
Applied and Environmental Microbiology 66 (9), 3711-3721, 2000
Subsurface microbial diversity in deep-granitic-fracture water in Colorado
JW Sahl, R Schmidt, ED Swanner, KW Mandernack, AS Templeton, ...
Applied and Environmental Microbiology 74 (1), 143-152, 2008
Diversity and stratification of archaea in a hypersaline microbial mat
CE Robertson, JR Spear, JK Harris, NR Pace
Applied and Environmental Microbiology 75 (7), 1801-1810, 2009
Disturbance and temporal partitioning of the activated sludge metacommunity
DC Vuono, J Benecke, J Henkel, WC Navidi, TY Cath, J Munakata-Marr, ...
The ISME journal 9 (2), 425-435, 2015
Modeling the removal of uranium U (VI) from aqueous solutions in the presence of sulfate reducing bacteria
JR Spear, LA Figueroa, BD Honeyman
Environmental science & technology 33 (15), 2667-2675, 1999
[FeFe]-hydrogenase in Yellowstone National Park: evidence for dispersal limitation and phylogenetic niche conservatism
ES Boyd, TL Hamilton, JR Spear, M Lavin, JW Peters
The ISME journal 4 (12), 1485-1495, 2010
Microbial diversity in modern marine stromatolites, Highborne Cay, Bahamas
LK Baumgartner, JR Spear, DH Buckley, NR Pace, RP Reid, C Dupraz, ...
Environmental Microbiology 11 (10), 2710-2719, 2009
Complexity in natural microbial ecosystems: the Guerrero Negro experience
JR Spear, RE Ley, AB Berger, NR Pace
The Biological Bulletin 204 (2), 168-173, 2003
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