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PM Berube
PM Berube
Verified email at mit.edu
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Cited by
Cited by
Year
Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria
W Martens-Habbena, PM Berube, H Urakawa, JR de La Torre, DA Stahl
Nature 461 (7266), 976-979, 2009
16902009
Prochlorococcus: the structure and function of collective diversity
SJ Biller, PM Berube, D Lindell, SW Chisholm
Nature Reviews Microbiology 13 (1), 13-27, 2015
5072015
Widespread metabolic potential for nitrite and nitrate assimilation among Prochlorococcus ecotypes
AC Martiny, S Kathuria, PM Berube
Proceedings of the National Academy of Sciences 106 (26), 10787-10792, 2009
2212009
Whole‐genome analysis of the ammonia‐oxidizing bacterium, Nitrosomonas eutropha C91: implications for niche adaptation
LY Stein, DJ Arp, PM Berube, PSG Chain, L Hauser, MSM Jetten, ...
Environmental microbiology 9 (12), 2993-3007, 2007
2052007
Marine microbial metagenomes sampled across space and time
SJ Biller, PM Berube, K Dooley, M Williams, BM Satinsky, T Hackl, ...
Scientific data 5 (1), 1-7, 2018
1722018
Charting the complexity of the marine microbiome through single-cell genomics
MG Pachiadaki, JM Brown, J Brown, O Bezuidt, PM Berube, SJ Biller, ...
Cell 179 (7), 1623-1635. e11, 2019
1692019
Closely related phytoplankton species produce similar suites of dissolved organic matter
JW Becker, PM Berube, CL Follett, JB Waterbury, SW Chisholm, ...
Frontiers in microbiology 5, 62604, 2014
1372014
Physiology and evolution of nitrate acquisition in Prochlorococcus
PM Berube, SJ Biller, AG Kent, JW Berta-Thompson, SE Roggensack, ...
The ISME journal 9 (5), 1195-1207, 2015
1352015
Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis
RR Malmstrom, S Rodrigue, KH Huang, L Kelly, SE Kern, A Thompson, ...
The ISME journal 7 (1), 184-198, 2013
1212013
Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus
SJ Biller, PM Berube, JW Berta-Thompson, L Kelly, SE Roggensack, ...
Scientific Data 1 (1), 1-11, 2014
1162014
Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments
PM Berube, SJ Biller, T Hackl, SL Hogle, BM Satinsky, JW Becker, ...
Scientific data 5 (1), 1-11, 2018
812018
Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations
W Qin, SA Amin, RA Lundeen, KR Heal, W Martens-Habbena, ...
The ISME Journal 12 (2), 508-519, 2018
772018
Emergence of trait variability through the lens of nitrogen assimilation in Prochlorococcus
PM Berube, A Rasmussen, R Braakman, R Stepanauskas, SW Chisholm
Elife 8, e41043, 2019
622019
Transcription of All amoC Copies Is Associated with Recovery of Nitrosomonas europaea from Ammonia Starvation
PM Berube, R Samudrala, DA Stahl
Journal of Bacteriology 189 (11), 3935-3944, 2007
562007
Novel integrative elements and genomic plasticity in ocean ecosystems
T Hackl, R Laurenceau, MJ Ankenbrand, C Bliem, Z Cariani, E Thomas, ...
Cell 186 (1), 47-62. e16, 2023
522023
The Divergent AmoC3 Subunit of Ammonia Monooxygenase Functions as Part of a Stress Response System in Nitrosomonas europaea
PM Berube, DA Stahl
Journal of bacteriology 194 (13), 3448-3456, 2012
452012
Phosphonate production by marine microbes: exploring new sources and potential function
M Acker, SL Hogle, PM Berube, T Hackl, A Coe, R Stepanauskas, ...
Proceedings of the National Academy of Sciences 119 (11), e2113386119, 2022
432022
Evaluating and improving small subunit rRNA PCR primer coverage for bacteria, archaea, and eukaryotes using metagenomes from global ocean surveys
J McNichol, PM Berube, SJ Biller, JA Fuhrman
Msystems 6 (3), 10.1128/msystems. 00565-21, 2021
362021
Ammonia oxidation kinetics determine niche separation of nitrifying
W Martens-Habbena, PM Berube, H Urakawa, JR de La Torre, DA Stahl
Archaea, 2009
352009
Temporal dynamics of Prochlorococcus cells with the potential for nitrate assimilation in the subtropical Atlantic and Pacific oceans
PM Berube, A Coe, SE Roggensack, SW Chisholm
Limnology and Oceanography 61 (2), 482-495, 2016
332016
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Articles 1–20