| Evolution of Darwin’s finches and their beaks revealed by genome sequencing S Lamichhaney, J Berglund, MS Almén, K Maqbool, M Grabherr, ... Nature 518 (7539), 371-375, 2015 | 946 | 2015 |
| Strong signatures of selection in the domestic pig genome CJ Rubin, HJ Megens, AM Barrio, K Maqbool, S Sayyab, D Schwochow, ... Proceedings of the National Academy of Sciences 109 (48), 19529-19536, 2012 | 656 | 2012 |
| Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication M Carneiro, CJ Rubin, F Di Palma, FW Albert, J Alföldi, AM Barrio, ... Science 345 (6200), 1074-1079, 2014 | 428 | 2014 |
| Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping A Vaysse, A Ratnakumar, T Derrien, E Axelsson, G Rosengren Pielberg, ... PLoS genetics 7 (10), e1002316, 2011 | 427 | 2011 |
| A robust benchmark for detection of germline large deletions and insertions JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ... Nature biotechnology 38 (11), 1347-1355, 2020 | 355* | 2020 |
| Population-scale sequencing reveals genetic differentiation due to local adaptation in Atlantic herring S Lamichhaney, AM Barrio, N Rafati, G Sundström, CJ Rubin, ER Gilbert, ... Proceedings of the National Academy of Sciences 109 (47), 19345-19350, 2012 | 299 | 2012 |
| Resolving the full spectrum of human genome variation using Linked-Reads P Marks, S Garcia, AM Barrio, K Belhocine, J Bernate, R Bharadwaj, ... Genome research 29 (4), 635-645, 2019 | 223 | 2019 |
| The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing A Martinez Barrio, S Lamichhaney, G Fan, N Rafati, M Pettersson, ... elife 5, e12081, 2016 | 188 | 2016 |
| Benchmarking challenging small variants with linked and long reads J Wagner, ND Olson, L Harris, Z Khan, J Farek, M Mahmoud, A Stankovic, ... Cell genomics 2 (5), 2022 | 131 | 2022 |
| Integrating T cell receptor sequences and transcriptional profiles by clonotype neighbor graph analysis (CoNGA) SA Schattgen, K Guion, JC Crawford, A Souquette, AM Barrio, ... Nature biotechnology 40 (1), 54-63, 2022 | 89 | 2022 |
| The genetic architecture of domestication in the chicken: effects of pleiotropy and linkage D Wright, CJ Rubin, A Martinez Barrio, K Schütz, S Kerje, H Brändström, ... Molecular ecology 19 (23), 5140-5156, 2010 | 75 | 2010 |
| The genomic footprint of sexual conflict A Sayadi, A Martinez Barrio, E Immonen, J Dainat, D Berger, ... Nature ecology & evolution 3 (12), 1725-1730, 2019 | 71 | 2019 |
| A diploid assembly-based benchmark for variants in the major histocompatibility complex CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ... Nature communications 11 (1), 4794, 2020 | 62 | 2020 |
| Amelanism in the corn snake is associated with the insertion of an LTR-retrotransposon in the OCA2 gene SV Saenko, S Lamichhaney, AM Barrio, N Rafati, L Andersson, ... Scientific reports 5 (1), 17118, 2015 | 48 | 2015 |
| The first sequenced carnivore genome shows complex host-endogenous retrovirus relationships Á Martínez Barrio, M Ekerljung, P Jern, F Benachenhou, GO Sperber, ... PloS one 6 (5), e19832, 2011 | 40 | 2011 |
| EVALLER: a web server for in silico assessment of potential protein allergenicity AM Barrio, D Soeria-Atmadja, A Nister, MG Gustafsson, U Hammerling, ... Nucleic acids research 35 (suppl_2), W694-W700, 2007 | 40 | 2007 |
| RAD sequencing and a hybrid Antarctic fur seal genome assembly reveal rapidly decaying linkage disequilibrium, global population structure and evidence for inbreeding E Humble, KK Dasmahapatra, A Martinez-Barrio, I Gregório, J Forcada, ... G3: Genes, Genomes, Genetics 8 (8), 2709-2722, 2018 | 35 | 2018 |
| A draft fur seal genome provides insights into factors affecting SNP validation and how to mitigate them E Humble, A Martinez‐Barrio, J Forcada, PN Trathan, MAS Thorne, ... Molecular ecology resources 16 (4), 909-921, 2016 | 31 | 2016 |
| Annotation and visualization of endogenous retroviral sequences using the Distributed Annotation System (DAS) and eBioX Á Martínez Barrio, E Lagercrantz, GO Sperber, J Blomberg, ... BMC bioinformatics 10, 1-12, 2009 | 27 | 2009 |
| The methylation landscape and its role in domestication and gene regulation in the chicken A Höglund, R Henriksen, J Fogelholm, AM Churcher, ... Nature ecology & evolution 4 (12), 1713-1724, 2020 | 26 | 2020 |
Carl-Johan RubinUppsala UniversityVerified email at imbim.uu.se
