| Boolean network simulations for life scientists I Albert, J Thakar, S Li, R Zhang, R Albert Source code for biology and medicine 3 (1), 1-8, 2008 | 380 | 2008 |
| Quantitative set analysis for gene expression: a method to quantify gene set differential expression including gene-gene correlations G Yaari, CR Bolen, J Thakar, SH Kleinstein Nucleic acids research 41 (18), e170-e170, 2013 | 214 | 2013 |
| Modeling systems-level regulation of host immune responses J Thakar, M Pilione, G Kirimanjeswara, ET Harvill, R Albert PLoS computational biology 3 (6), e109, 2007 | 158 | 2007 |
| Boolean modeling: a logic‐based dynamic approach for understanding signaling and regulatory networks and for making useful predictions R Albert, J Thakar Wiley Interdisciplinary Reviews: Systems Biology and Medicine 6 (5), 353-369, 2014 | 156 | 2014 |
| Generating super-shedders: co-infection increases bacterial load and egg production of a gastrointestinal helminth S Lass, PJ Hudson, J Thakar, J Saric, E Harvill, R Albert, SE Perkins Journal of The Royal Society Interface 10 (80), 20120588, 2013 | 106 | 2013 |
| Aging-dependent alterations in gene expression and a mitochondrial signature of responsiveness to human influenza vaccination J Thakar, S Mohanty, AP West, SR Joshi, I Ueda, J Wilson, H Meng, ... Aging (Albany NY) 7 (1), 38, 2015 | 76 | 2015 |
| Nectarless flowers: ecological correlates and evolutionary stability JD Thakar, K Kunte, AK Chauhan, AV Watve, MG Watve Oecologia 136 (4), 565-570, 2003 | 76 | 2003 |
| Bee-eaters (Merops orientalis) respond to what a predator can see M Watve, J Thakar, A Kale, S Puntambekar, I Shaikh, K Vaze, M Jog, ... Animal Cognition 5, 253-259, 2002 | 72 | 2002 |
| Network Model of Immune Responses Reveals Key Effectors to Single and Co-infection Dynamics by a Respiratory Bacterium and a Gastrointestinal Helminth J Thakar, AK Pathak, L Murphy, R Albert, IM Cattadori PLoS Computational Biology 8 (1), e1002345, 2012 | 70 | 2012 |
| Systems-level insights into cellular regulation: inferring, analysing, and modelling intracellular networks C Christensen, J Thakar, R Albert IET systems biology 1 (2), 61-77, 2007 | 69 | 2007 |
| Infant gut microbiome is enriched with Bifidobacterium longum ssp. infantis in Old Order Mennonites with traditional farming lifestyle AE Seppo, K Bu, M Jumabaeva, J Thakar, RA Choudhury, C Yonemitsu, ... Allergy 76 (11), 3489-3503, 2021 | 63 | 2021 |
| IL-1β-driven amyloid plaque clearance is associated with an expansion of transcriptionally reprogrammed microglia F Rivera-Escalera, JJ Pinney, L Owlett, H Ahmed, J Thakar, JA Olschowka, ... Journal of Neuroinflammation 16, 1-17, 2019 | 62 | 2019 |
| Computational and experimental analysis reveals a requirement for eosinophil-derived IL-13 for the development of allergic airway responses in C57BL/6 mice ER Walsh, J Thakar, K Stokes, F Huang, R Albert, A August The Journal of Immunology 186 (5), 2936-2949, 2011 | 53 | 2011 |
| Constraint-based network model of pathogen–immune system interactions J Thakar, A Saadatpour-Moghaddam, ET Harvill, R Albert Journal of The Royal Society Interface 6 (36), 599-612, 2009 | 52 | 2009 |
| Boolean models of within-host immune interactions J Thakar, R Albert Current opinion in microbiology 13 (3), 377-381, 2010 | 41 | 2010 |
| Immune Markers Associated with Host Susceptibility to Infection with West Nile Virus F Qian, J Thakar, X Yuan, M Nolan, KO Murray, WT Lee, SJ Wong, ... Viral Immunology 27 (2), 39-47, 2014 | 39 | 2014 |
| Human dendritic cell response signatures distinguish 1918, pandemic, and seasonal H1N1 influenza viruses BM Hartmann, J Thakar, RA Albrecht, S Avey, E Zaslavsky, N Marjanovic, ... Journal of virology 89 (20), 10190-10205, 2015 | 38 | 2015 |
| FUNNEL-GSEA: FUNctioNal ELastic-net regression in time-course gene set enrichment analysis Y Zhang, DJ Topham, J Thakar, X Qiu Bioinformatics 33 (13), 1944-1952, 2017 | 29 | 2017 |
| Humoral dysregulation associated with increased systemic inflammation among injection heroin users MS Piepenbrink, M Samuel, B Zheng, B Carter, C Fucile, C Bunce, ... PLoS One 11 (7), e0158641, 2016 | 29 | 2016 |
| Dynamic models of immune responses: what is the ideal level of detail? J Thakar, M Poss, R Albert, GH Long, R Zhang Theoretical Biology and Medical Modelling 7, 1-7, 2010 | 28 | 2010 |
Reka AlbertEvan Pugh University Professor, Penn StateVerified email at psu.edu
