| A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers MA Quail, M Smith, P Coupland, TD Otto, SR Harris, TR Connor, A Bertoni, ... BMC genomics 13, 1-13, 2012 | 2830 | 2012 |
| Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins NJ Croucher, AJ Page, TR Connor, AJ Delaney, JA Keane, SD Bentley, ... Nucleic acids research 43 (3), e15-e15, 2015 | 2155 | 2015 |
| Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health KE Holt, H Wertheim, RN Zadoks, S Baker, CA Whitehouse, D Dance, ... Proceedings of the National Academy of Sciences 112 (27), E3574-E3581, 2015 | 1260 | 2015 |
| Evaluating the effects of SARS-CoV-2 spike mutation D614G on transmissibility and pathogenicity E Volz, V Hill, JT McCrone, A Price, D Jorgensen, Á O’Toole, J Southgate, ... Cell 184 (1), 64-75. e11, 2021 | 1147 | 2021 |
| Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B. 1.617. 2) compared with alpha (B. 1.1. 7) variants of concern: a cohort study KA Twohig, T Nyberg, A Zaidi, S Thelwall, MA Sinnathamby, S Aliabadi, ... The Lancet Infectious Diseases 22 (1), 35-42, 2022 | 876 | 2022 |
| Emergence and global spread of epidemic healthcare-associated Clostridium difficile M He, F Miyajima, P Roberts, L Ellison, DJ Pickard, MJ Martin, TR Connor, ... Nature genetics 45 (1), 109-113, 2013 | 843 | 2013 |
| Evidence for several waves of global transmission in the seventh cholera pandemic A Mutreja, DW Kim, NR Thomson, TR Connor, JH Lee, S Kariuki, ... Nature 477 (7365), 462-465, 2011 | 830 | 2011 |
| Preliminary genomic characterisation of an emergent SARS-CoV-2 lineage in the UK defined by a novel set of spike mutations R Andrew Virological, 2020 | 810 | 2020 |
| Targeted Restoration of the Intestinal Microbiota with a Simple, Defined Bacteriotherapy Resolves Relapsing Clostridium difficile Disease in Mice TD Lawley, S Clare, AW Walker, MD Stares, TR Connor, C Raisen, ... PLoS pathogens 8 (10), e1002995, 2012 | 675 | 2012 |
| Hierarchical and spatially explicit clustering of DNA sequences with BAPS software L Cheng, TR Connor, J Sirén, DM Aanensen, J Corander Molecular biology and evolution 30 (5), 1224-1228, 2013 | 629 | 2013 |
| Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa CK Okoro, RA Kingsley, TR Connor, SR Harris, CM Parry, ... Nature genetics 44 (11), 1215-1221, 2012 | 467 | 2012 |
| Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B. 1.1. 7 B Meng, SA Kemp, G Papa, R Datir, IATM Ferreira, S Marelli, WT Harvey, ... Cell reports 35 (13), 2021 | 454 | 2021 |
| Distinguishable Epidemics of Multidrug-Resistant Salmonella Typhimurium DT104 in Different Hosts AE Mather, SWJ Reid, DJ Maskell, J Parkhill, MC Fookes, SR Harris, ... Science 341 (6153), 1514-1517, 2013 | 406 | 2013 |
| Shedding of SARS-CoV-2 in feces and urine and its potential role in person-to-person transmission and the environment-based spread of COVID-19 DL Jones, MQ Baluja, DW Graham, A Corbishley, JE McDonald, ... Science of the Total Environment 749, 141364, 2020 | 397 | 2020 |
| Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK L Du Plessis, JT McCrone, AE Zarebski, V Hill, C Ruis, B Gutierrez, ... Science 371 (6530), 708-712, 2021 | 393 | 2021 |
| Genome Sequencing and Analysis of the Tasmanian Devil and Its Transmissible Cancer EP Murchison, OB Schulz-Trieglaff, Z Ning, LB Alexandrov, MJ Bauer, ... Cell 148 (4), 780-791, 2012 | 366 | 2012 |
| SARS-CoV-2 within-host diversity and transmission KA Lythgoe, M Hall, L Ferretti, M de Cesare, G MacIntyre-Cockett, ... Science 372 (6539), eabg0821, 2021 | 337 | 2021 |
| A structure-based nomenclature for Bacillus thuringiensis and other bacteria-derived pesticidal proteins N Crickmore, C Berry, S Panneerselvam, R Mishra, TR Connor, ... Journal of invertebrate pathology 186, 107438, 2021 | 289 | 2021 |
| Salmonella bongori Provides Insights into the Evolution of the Salmonellae M Fookes, GN Schroeder, GC Langridge, CJ Blondel, C Mammina, ... PLoS pathogens 7 (8), e1002191, 2011 | 274 | 2011 |
| Patterns of genome evolution that have accompanied host adaptation in Salmonella GC Langridge, M Fookes, TR Connor, T Feltwell, N Feasey, BN Parsons, ... Proceedings of the National Academy of Sciences 112 (3), 863-868, 2015 | 270 | 2015 |
Simon R. HarrisSenior Program Officer, Bill & Melinda Gates FoundationVerified email at sanger.ac.uk
