| Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017 | 803 | 2017 |
| Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges A Gouin, A Bretaudeau, K Nam, S Gimenez, JM Aury, B Duvic, F Hilliou, ... Scientific reports 7 (1), 11816, 2017 | 301 | 2017 |
| Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 253 | 2022 |
| Spodoptera frugiperda (Lepidoptera: Noctuidae) host-plant variants: two host strains or two distinct species? P Dumas, F Legeai, C Lemaitre, E Scaon, M Orsucci, K Labadie, ... Genetica 143, 305-316, 2015 | 197 | 2015 |
| Reference-free detection of isolated SNPs R Uricaru, G Rizk, V Lacroix, E Quillery, O Plantard, R Chikhi, C Lemaitre, ... Nucleic acids research 43 (2), e11-e11, 2015 | 120 | 2015 |
| Multiple comparative metagenomics using multiset k-mer counting G Benoit, P Peterlongo, M Mariadassou, E Drezen, S Schbath, D Lavenier, ... PeerJ Computer Science 2, e94, 2016 | 119 | 2016 |
| Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph G Benoit, C Lemaitre, D Lavenier, E Drezen, T Dayris, R Uricaru, G Rizk BMC bioinformatics 16, 1-14, 2015 | 109 | 2015 |
| Footprints of inversions at present and past pseudoautosomal boundaries in human sex chromosomes C Lemaitre, MDV Braga, C Gautier, MF Sagot, E Tannier, GAB Marais Genome biology and evolution 1, 56-66, 2009 | 104 | 2009 |
| GATB: genome assembly & analysis tool box E Drezen, G Rizk, R Chikhi, C Deltel, C Lemaitre, P Peterlongo, ... Bioinformatics 30 (20), 2959-2961, 2014 | 96 | 2014 |
| Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems DJ Richter, R Watteaux, T Vannier, J Leconte, P Frémont, G Reygondeau, ... Elife 11, e78129, 2022 | 87 | 2022 |
| Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation C Lemaitre, L Zaghloul, MF Sagot, C Gautier, A Arneodo, E Tannier, ... BMC genomics 10, 1-12, 2009 | 78 | 2009 |
| Compareads: comparing huge metagenomic experiments N Maillet, C Lemaitre, R Chikhi, D Lavenier, P Peterlongo BMC bioinformatics 13, 1-10, 2012 | 77 | 2012 |
| MindTheGap: integrated detection and assembly of short and long insertions G Rizk, A Gouin, R Chikhi, C Lemaitre Bioinformatics 30 (24), 3451-3457, 2014 | 67 | 2014 |
| Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches C Guyomar, F Legeai, E Jousselin, C Mougel, C Lemaitre, JC Simon Microbiome 6, 1-21, 2018 | 62 | 2018 |
| Close 3D proximity of evolutionary breakpoints argues for the notion of spatial synteny AS Véron, C Lemaitre, C Gautier, V Lacroix, MF Sagot BMC genomics 12, 1-13, 2011 | 54 | 2011 |
| Precise detection of rearrangement breakpoints in mammalian chromosomes C Lemaitre, E Tannier, C Gautier, MF Sagot BMC bioinformatics 9, 1-15, 2008 | 54 | 2008 |
| Whole-genome re-sequencing of non-model organisms: lessons from unmapped reads A Gouin, F Legeai, P Nouhaud, A Whibley, JC Simon, C Lemaitre Heredity 114 (5), 494-501, 2015 | 50 | 2015 |
| Disentangling the causes for faster-X evolution in aphids J Jaquiéry, J Peccoud, T Ouisse, F Legeai, N Prunier-Leterme, A Gouin, ... Genome Biology and Evolution 10 (2), 507-520, 2018 | 49 | 2018 |
| DiscoSnp++: de novo detection of small variants from raw unassembled read set(s) P Peterlongo, C Riou, E Drezen, C Lemaitre BioRxiv, 209965, 2017 | 40 | 2017 |
| Identifying genomic hotspots of differentiation and candidate genes involved in the adaptive divergence of pea aphid host races P Nouhaud, M Gautier, A Gouin, J Jaquiéry, J Peccoud, F Legeai, ... Molecular Ecology 27 (16), 3287-3300, 2018 | 38 | 2018 |
Pierre PeterlongoInria - GenScale teamVerified email at inria.fr
