Snoep JL
Snoep JL
Stellenbosch University; Manchester University; Vrije Universiteit Amsterdam
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The systems biology graphical notation
NL Novère, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ...
Nature biotechnology 27 (8), 735-741, 2009
BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems
N Le Novere, B Bornstein, A Broicher, M Courtot, M Donizelli, H Dharuri, ...
Nucleic acids research 34 (suppl_1), D689-D691, 2006
Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? Testing biochemistry
B Teusink, J Passarge, CA Reijenga, E Esgalhado, CC Van der Weijden, ...
European journal of biochemistry 267 (17), 5313-5329, 2000
Minimum information requested in the annotation of biochemical models (MIRIAM)
NL Novère, A Finney, M Hucka, US Bhalla, F Campagne, J Collado-Vides, ...
Nature biotechnology 23 (12), 1509-1515, 2005
BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models
C Li, M Donizelli, N Rodriguez, H Dharuri, L Endler, V Chelliah, L Li, E He, ...
BMC systems biology 4, 1-14, 2010
The Steady-State Internal Redox State (NADH/NAD) Reflects the External Redox State and Is Correlated with Catabolic Adaptation in Escherichia coli
MR De Graef, S Alexeeva, JL Snoep, MJ Teixeira de Mattos
Journal of bacteriology 181 (8), 2351-2357, 1999
Web-based kinetic modelling using JWS Online
BG Olivier, JL Snoep
Bioinformatics 20 (13), 2143-2144, 2004
The Glycolytic Flux in Escherichia coli Is Controlled by the Demand for ATP
BJ Koebmann, HV Westerhoff, JL Snoep, D Nilsson, PR Jensen
Journal of bacteriology 184 (14), 3909-3916, 2002
Reproducible computational biology experiments with SED-ML-the simulation experiment description markup language
D Waltemath, R Adams, FT Bergmann, M Hucka, F Kolpakov, AK Miller, ...
BMC systems biology 5, 1-10, 2011
Metabolic engineering of lactic acid bacteria, the combined approach: kinetic modelling, metabolic control and experimental analysis
MHN Hoefnagel, MJC Starrenburg, DE Martens, J Hugenholtz, ...
Microbiology 148 (4), 1003-1013, 2002
Isolation, characterization, and physiological role of the pyruvate dehydrogenase complex and alpha-acetolactate synthase of Lactococcus lactis subsp. lactis bv. diacetylactis
JL Snoep, MJ Teixeira de Mattos, MJ Starrenburg, J Hugenholtz
Journal of Bacteriology 174 (14), 4838-4841, 1992
Construction and Characterization of an Effector Strain of Streptococcus mutans for Replacement Therapy of Dental Caries
JD Hillman, TA Brooks, SM Michalek, CC Harmon, JL Snoep, ...
Infection and immunity 68 (2), 543-549, 2000
Towards building the silicon cell: a modular approach
JL Snoep, F Bruggeman, BG Olivier, HV Westerhoff
Biosystems 83 (2-3), 207-216, 2006
Minimum information about a simulation experiment (MIASE)
D Waltemath, R Adams, DA Beard, FT Bergmann, US Bhalla, R Britten, ...
PLoS computational biology 7 (4), e1001122, 2011
Transduction of intracellular and intercellular dynamics in yeast glycolytic oscillations
J Wolf, J Passarge, OJG Somsen, JL Snoep, R Heinrich, HV Westerhoff
Biophysical Journal 78 (3), 1145-1153, 2000
Role of Hexose Transport in Control of Glycolytic Flux in Saccharomyces cerevisiae
K Elbing, C Larsson, RM Bill, E Albers, JL Snoep, E Boles, S Hohmann, ...
Applied and environmental microbiology 70 (9), 5323-5330, 2004
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data
JA McMurry, N Juty, N Blomberg, T Burdett, T Conlin, N Conte, M Courtot, ...
PLoS biology 15 (6), e2001414, 2017
Protein burden in Zymomonas mobilis: negative flux and growth control due to overproduction of glycolytic enzymes
JL Snoep, LP Yomano, HV Westerhoff, LO Ingram
Microbiology 141 (9), 2329-2337, 1995
SEEK: a systems biology data and model management platform
K Wolstencroft, S Owen, O Krebs, Q Nguyen, NJ Stanford, M Golebiewski, ...
BMC systems biology 9, 1-12, 2015
DNA supercoiling in Escherichia coli is under tight and subtle homeostatic control, involving gene‐expression and metabolic regulation of both topoisomerase I …
JL Snoep, CC van der Weijden, HW Andersen, HV Westerhoff, PR Jensen
European Journal of Biochemistry 269 (6), 1662-1669, 2002
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