Simon Rasmussen

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Thomas Sicheritz-PontenProfessor in Computational Phage Biodiscovery, University of CopenhagenVerified email at sund.ku.dk
Frank AarestrupTechnical University of Denmark, DTUVerified email at food.dtu.dk
Ole LundTechnical University of DenmarkVerified email at dtu.dk
Henrik Bjørn NielsenChief Scientific Officer, Clinical-Microbiomics A/SVerified email at clinical-microbiomics.com
Eske WillerslevCentre for GeoGenetics, University of CopenhagenVerified email at snm.ku.dk
Henrik HasmanStatens Serum InstitutVerified email at hasman.dk
Mette Voldby LarsenVerified email at goseqit.com
Salvatore CosentinoResearch Associate at Iwasaki lab., Graduate School of Frontier Sciences, The University of TokyoVerified email at k.u-tokyo.ac.jp
martin sikoraUniversity of CopenhagenVerified email at sund.ku.dk
Rasmus NielsenUC Berkeley, University of CopenhagenVerified email at sund.ku.dk
Morten E. AllentoftProfessor, TrEnD Lab, Curtin University & Globe Institute, University of CopenhagenVerified email at snm.ku.dk
Rosa Lundbye AllesøePhD student, Novo Nordisk foundation Center for Protein ResearchVerified email at cpr.ku.dk
Ea ZankariVerified email at cbs.dtu.dk
Søren BrunakProfessor of Disease Systems Biology, University of CopenhagenVerified email at cpr.ku.dk
Michael Eriksen BenrosProfessor; University of Copenhagen and Copenhagen University Hospital, Mental Health CentreVerified email at regionh.dk
Dave UsseryProfessor, Department of BioMedical Informatics, UAMSVerified email at uams.edu
Hanne JarmerCEO & Founder at Go DogoVerified email at go-dogo.com
Atle BonesProfessor of cell-, molecular biology and genomics, NTNU, NorwayVerified email at ntnu.no
Pankaj BarahAssistant Professor & Ramalingaswami Fellow, Tezpur University (Central), Assam, IndiaVerified email at tezu.ernet.in
john mundyUniversity of CopenhagenVerified email at bio.ku.dk

Simon Rasmussen

Professor, University of Copenhagen

Verified email at sund.ku.dk

Bioinformatics Deep Learning Proteomics Genomics Microbiome


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Identification of acquired antimicrobial resistance genes E Zankari, H Hasman, S Cosentino, M Vestergaard, S Rasmussen, ... Journal of Antimicrobial Chemotherapy, 2012	4985	2012
Richness of human gut microbiome correlates with metabolic markers E Le Chatelier, T Nielsen, J Qin, E Prifti, F Hildebrand, G Falony, ... Nature 500 (7464), 541-546, 2013	4905	2013
Multilocus sequence typing of total-genome-sequenced bacteria MV Larsen, S Cosentino, S Rasmussen, C Friis, H Hasman, RL Marvig, ... Journal of clinical microbiology 50 (4), 1355-1361, 2012	2281	2012
Population genomics of bronze age Eurasia ME Allentoft, M Sikora, KG Sjögren, S Rasmussen, M Rasmussen, ... Nature 522 (7555), 167-172, 2015	1865	2015
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ... Nature biotechnology 32 (8), 822-828, 2014	1128	2014
Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans M Raghavan, P Skoglund, KE Graf, M Metspalu, A Albrechtsen, I Moltke, ... Nature 505 (7481), 87-91, 2014	994	2014
An Aboriginal Australian genome reveals separate human dispersals into Asia M Rasmussen, X Guo, Y Wang, KE Lohmueller, S Rasmussen, ... Science 334 (6052), 94-98, 2011	891	2011
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ... Nature communications 10 (1), 1124, 2019	785	2019
Early divergent strains of Yersinia pestis in Eurasia 5,000 years ago S Rasmussen, ME Allentoft, K Nielsen, L Orlando, M Sikora, KG Sjögren, ... Cell 163 (3), 571-582, 2015	656	2015
Genomic evidence for the Pleistocene and recent population history of Native Americans M Raghavan, M Steinrücken, K Harris, S Schiffels, S Rasmussen, ... Science 349 (6250), aab3884, 2015	626	2015
A genomic history of Aboriginal Australia AS Malaspinas, MC Westaway, C Muller, VC Sousa, O Lao, I Alves, ... Nature 538 (7624), 207-214, 2016	615	2016
The genome of a Late Pleistocene human from a Clovis burial site in western Montana M Rasmussen, SL Anzick, MR Waters, P Skoglund, M DeGiorgio, ... Nature 506 (7487), 225-229, 2014	610	2014
Transcriptome responses to combinations of stresses in Arabidopsis thaliana. S Rasmussen, P Barah, MC Suarez-Rodriguez, S Bressendorff, P Friis, ... Plant physiology, 2013	568	2013
Metagenomic species profiling using universal phylogenetic marker genes S Sunagawa, DR Mende, G Zeller, F Izquierdo-Carrasco, SA Berger, ... Nature methods 10 (12), 1196-1199, 2013	521	2013
137 ancient human genomes from across the Eurasian steppes PB Damgaard, N Marchi, S Rasmussen, M Peyrot, G Renaud, ... Nature 557 (7705), 369-374, 2018	475	2018
Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European I Olalde, ME Allentoft, F Sánchez-Quinto, G Santpere, CWK Chiang, ... Nature 507 (7491), 225-228, 2014	435	2014
The first horse herders and the impact of early Bronze Age steppe expansions into Asia P de Barros Damgaard, R Martiniano, J Kamm, JV Moreno-Mayar, ... Science 360 (6396), eaar7711, 2018	416	2018
The genetic prehistory of the New World Arctic M Raghavan, M DeGiorgio, A Albrechtsen, I Moltke, P Skoglund, ... Science 345 (6200), 1255832, 2014	389	2014
The prehistoric peopling of Southeast Asia H McColl, F Racimo, L Vinner, F Demeter, T Gakuhari, JV Moreno-Mayar, ... Science 361 (6397), 88-92, 2018	381	2018
The population history of northeastern Siberia since the Pleistocene M Sikora, VV Pitulko, VC Sousa, ME Allentoft, L Vinner, S Rasmussen, ... Nature 570 (7760), 182-188, 2019	369	2019

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