| The performance of the date-randomization test in phylogenetic analyses of time-structured virus data S Duchêne, D Duchêne, EC Holmes, SYW Ho Molecular Biology and Evolution 32 (7), 1895-1906, 2015 | 170 | 2015 |
| Bayesian molecular dating: opening up the black box L Bromham, S Duchêne, X Hua, AM Ritchie, DA Duchêne, SYW Ho Biological Reviews 93 (2), 1165-1191, 2018 | 153 | 2018 |
| Bayesian evaluation of temporal signal in measurably evolving populations S Duchene, P Lemey, T Stadler, SYW Ho, DA Duchene, V Dhanasekaran, ... Molecular Biology and Evolution 37 (11), 3363-3379, 2020 | 110 | 2020 |
| Simulating and detecting autocorrelation of molecular evolutionary rates among lineages SYW Ho, S Duchêne, D Duchêne Molecular ecology resources 15 (4), 688-696, 2015 | 99 | 2015 |
| Analysis of phylogenomic tree space resolves relationships among marsupial families DA Duchêne, JG Bragg, S Duchêne, LE Neaves, S Potter, C Moritz, ... Systematic Biology 67 (3), 400-412, 2018 | 93 | 2018 |
| Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts JA Rasmussen, KR Villumsen, DA Duchêne, LC Puetz, TO Delmont, ... Communications Biology 4 (1), 579, 2021 | 84 | 2021 |
| Rates of molecular evolution and diversification in plants: chloroplast substitution rates correlate with species-richness in the Proteaceae D Duchene, L Bromham BMC evolutionary biology 13, 1-11, 2013 | 69 | 2013 |
| Ancient and modern genomes unravel the evolutionary history of the rhinoceros family S Liu, MV Westbury, N Dussex, KJ Mitchell, MHS Sinding, PD Heintzman, ... Cell 184 (19), 4874-4885. e16, 2021 | 67 | 2021 |
| Accounting for uncertainty in the evolutionary timescale of green plants through clock-partitioning and fossil calibration strategies Y Nie, CSP Foster, T Zhu, R Yao, DA Duchêne, SYW Ho, B Zhong Systematic biology 69 (1), 1-16, 2020 | 66 | 2020 |
| A simulation-based evaluation of tip-dating under the fossilized birth-death process A Luo, DA Duchêne, C Zhang, CD Zhu, SYW Ho Systematic Biology 69 (2), 325–344, 2020 | 54 | 2020 |
| Evaluating the adequacy of molecular clock models using posterior predictive simulations DA Duchêne, S Duchêne, EC Holmes, SYW Ho Molecular Biology and Evolution 32 (11), 2986-2995, 2015 | 51 | 2015 |
| Linking branch lengths across sets of loci provides the highest statistical support for phylogenetic inference DA Duchêne, KJ Tong, CSP Foster, S Duchêne, R Lanfear, SYW Ho Molecular Biology and Evolution 37 (4), 1202-1210, 2020 | 49 | 2020 |
| Tree imbalance causes a bias in phylogenetic estimation of evolutionary timescales using heterochronous sequences D Duchêne, S Duchêne, SYW Ho Molecular ecology resources 15 (4), 785-794, 2015 | 46 | 2015 |
| Evidence for concerted and mosaic brain evolution in dragon lizards D Hoops, M Vidal-García, JFP Ullmann, AL Janke, T Stait-Gardner, ... Brain Behavior and Evolution 90 (3), 211-223, 2017 | 45 | 2017 |
| New statistical criteria detect phylogenetic bias caused by compositional heterogeneity DA Duchêne, S Duchêne, SYW Ho Molecular Biology and Evolution 34 (6), 1529-1534, 2017 | 41 | 2017 |
| Phylodynamic model adequacy using posterior predictive simulations S Duchene, R Bouckaert, DA Duchene, T Stadler, AJ Drummond Systematic Biology 68 (2), 358-364, 2019 | 39 | 2019 |
| PhyloMAd: efficient assessment of phylogenomic model adequacy DA Duchêne, S Duchêne, SYW Ho Bioinformatics 34 (13), 2300-2301, 2018 | 35 | 2018 |
| Phylogenetic patterns in the geographic distributions of birds support the tropical conservatism hypothesis DA Duchêne, M Cardillo Global Ecology and Biogeography 24 (11), 1261-1268, 2015 | 35 | 2015 |
| Complexity of avian evolution revealed by family-level genomes J Stiller, S Feng, AA Chowdhury, I Rivas-González, DA Duchêne, Q Fang, ... Nature 629 (8013), 851-860, 2024 | 29 | 2024 |
| Excluding loci with substitution saturation improves inferences from phylogenomic data DA Duchêne, N Mather, C Van Der Wal, SYW Ho Systematic Biology, https://doi.org/10.1093/sysbio/syab075, 2021 | 29 | 2021 |
Simon HoProfessor of Molecular Evolution, University of SydneyVerified email at sydney.edu.au
