| Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0 J Schellenberger, R Que, RMT Fleming, I Thiele, JD Orth, AM Feist, ... Nature Protocols 6 (9), 1290-1307, 2011 | 1670 | 2011 |
| Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0 L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ... Nature protocols 14 (3), 639-702, 2019 | 1098 | 2019 |
| Constraint-based models predict metabolic and associated cellular functions A Bordbar, JM Monk, ZA King, BO Palsson Nature Reviews Genetics 15 (2), 107-120, 2014 | 940 | 2014 |
| Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome NE Lewis, X Liu, Y Li, H Nagarajan, G Yerganian, E O'Brien, A Bordbar, ... Nature biotechnology 31 (8), 759-765, 2013 | 461 | 2013 |
| Large-scale in silico modeling of metabolic interactions between cell types in the human brain NE Lewis, G Schramm, A Bordbar, J Schellenberger, MP Andersen, ... Nature biotechnology 28 (12), 1279-1285, 2010 | 314 | 2010 |
| Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions A Bordbar, NE Lewis, J Schellenberger, BØ Palsson, N Jamshidi Molecular systems biology 6 (1), 422, 2010 | 313 | 2010 |
| A Consensus Genome-scale Reconstruction of Chinese Hamster Ovary Cell Metabolism H Hefzi, KS Ang, M Hanscho, A Bordbar, D Ruckerbauer, M Lakshmanan, ... Cell Systems 3 (5), 434-443. e8, 2016 | 249 | 2016 |
| A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology A Bordbar, AM Feist, R Usaite-Black, J Woodcock, BO Palsson, I Famili BMC systems biology 5 (1), 180, 2011 | 225 | 2011 |
| Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation A Bordbar, ML Mo, ES Nakayasu, AC Schrimpe-Rutledge, YM Kim, ... Molecular Systems Biology 8 (1), 2012 | 184 | 2012 |
| Multi-omic data integration enables discovery of hidden biological regularities A Ebrahim, E Brunk, J Tan, EJ O'brien, D Kim, R Szubin, JA Lerman, ... Nature communications 7 (1), 13091, 2016 | 171 | 2016 |
| Using the reconstructed genome‐scale human metabolic network to study physiology and pathology A Bordbar, BO Palsson Journal of Internal Medicine 271 (2), 131-141, 2012 | 137 | 2012 |
| Elucidating dynamic metabolic physiology through network integration of quantitative time-course metabolomics A Bordbar, JT Yurkovich, G Paglia, O Rolfsson, ÓE Sigurjónsson, ... Scientific reports 7 (1), 46249, 2017 | 135 | 2017 |
| Multiscale Modeling of Metabolism and Macromolecular Synthesis in E. coli and Its Application to the Evolution of Codon Usage I Thiele, RMT Fleming, R Que, A Bordbar, D Diep, BO Palsson PLOS ONE 7 (9), e45635, 2012 | 132 | 2012 |
| iAB-RBC-283: A proteomically derived knowledge-base of erythrocyte metabolism that can be used to simulate its physiological and patho-physiological states A Bordbar, N Jamshidi, BO Palsson BMC systems biology 5 (1), 110, 2011 | 123 | 2011 |
| Personalized Whole-Cell Kinetic Models of Metabolism for Discovery in Genomics and Pharmacodynamics A Bordbar, D McCloskey, DC Zielinski, N Sonnenschein, N Jamshidi, ... Cell Systems 1 (4), 283-292, 2015 | 118 | 2015 |
| Biomarkers defining the metabolic age of red blood cells during cold storage G Paglia, A D’Alessandro, Ó Rolfsson, ÓE Sigurjónsson, A Bordbar, ... Blood 128 (13), e43-e50, 2016 | 116 | 2016 |
| Systems biology analysis of drivers underlying hallmarks of cancer cell metabolism DC Zielinski, N Jamshidi, AJ Corbett, A Bordbar, A Thomas, BO Palsson Scientific reports 7, 41241, 2017 | 108 | 2017 |
| Identified metabolic signature for assessing red blood cell unit quality is associated with endothelial damage markers and clinical outcomes A Bordbar, PI Johansson, G Paglia, SJ Harrison, K Wichuk, ... Transfusion 56 (4), 852-862, 2016 | 104 | 2016 |
| Citrate metabolism in red blood cells stored in additive solution‐3 A D'alessandro, T Nemkov, T Yoshida, A Bordbar, BO Palsson, ... Transfusion 57 (2), 325-336, 2017 | 102 | 2017 |
| Functional characterization of alternate optimal solutions of Escherichia coli's transcriptional and translational machinery I Thiele, RMT Fleming, A Bordbar, J Schellenberger, BØ Palsson Biophysical journal 98 (10), 2072, 2010 | 89 | 2010 |
Bernhard PalssonBioengineering and Pediatrics, UC-San DiegoVerified email at ucsd.edu
