| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 16955 | 2019 |
| A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017 | 2494 | 2017 |
| Best practices for analysing microbiomes R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ... Nature Reviews Microbiology 16 (7), 410-422, 2018 | 1663 | 2018 |
| Deblur rapidly resolves single-nucleotide community sequence patterns A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, Z Zech Xu, ... MSystems 2 (2), 10.1128/msystems. 00191-16, 2017 | 1512 | 2017 |
| QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 1108 | 2018 |
| Parkinson's disease and Parkinson's disease medications have distinct signatures of the gut microbiome EM Hill‐Burns, JW Debelius, JT Morton, WT Wissemann, MR Lewis, ... Movement disorders 32 (5), 739-749, 2017 | 881 | 2017 |
| Microbiome-wide association studies link dynamic microbial consortia to disease JA Gilbert, RA Quinn, J Debelius, ZZ Xu, J Morton, N Garg, JK Jansson, ... Nature 535 (7610), 94-103, 2016 | 789 | 2016 |
| American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), 10.1128/msystems. 00031-18, 2018 | 742 | 2018 |
| Establishing microbial composition measurement standards with reference frames JT Morton, C Marotz, A Washburne, J Silverman, LS Zaramela, A Edlund, ... Nature communications 10 (1), 2719, 2019 | 580 | 2019 |
| A novel sparse compositional technique reveals microbial perturbations C Martino, JT Morton, CA Marotz, LR Thompson, A Tripathi, R Knight, ... MSystems 4 (1), 10.1128/msystems. 00016-19, 2019 | 355 | 2019 |
| Impact of dietary resistant starch on the human gut microbiome, metaproteome, and metabolome TV Maier, M Lucio, LH Lee, NC VerBerkmoes, CJ Brislawn, J Bernhardt, ... MBio 8 (5), 10.1128/mbio. 01343-17, 2017 | 317 | 2017 |
| The ecology of microscopic life in household dust A Barberán, RR Dunn, BJ Reich, K Pacifici, EB Laber, HL Menninger, ... Proceedings of the Royal Society B: Biological Sciences 282 (1814), 20151139, 2015 | 314 | 2015 |
| Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ... Nature communications 10 (1), 5477, 2019 | 310 | 2019 |
| Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes KR Amato, JG Sanders, SJ Song, M Nute, JL Metcalf, LR Thompson, ... The ISME journal 13 (3), 576-587, 2019 | 289 | 2019 |
| Learning representations of microbe–metabolite interactions JT Morton, AA Aksenov, LF Nothias, JR Foulds, RA Quinn, MH Badri, ... Nature methods 16 (12), 1306-1314, 2019 | 263 | 2019 |
| Immunization with a heat-killed preparation of the environmental bacterium Mycobacterium vaccae promotes stress resilience in mice SO Reber, PH Siebler, NC Donner, JT Morton, DG Smith, JM Kopelman, ... Proceedings of the National Academy of Sciences 113 (22), E3130-E3139, 2016 | 261 | 2016 |
| The microbiome in posttraumatic stress disorder and trauma-exposed controls: an exploratory study SMJ Hemmings, S Malan-Müller, LL van den Heuvel, BA Demmitt, ... Psychosomatic medicine 79 (8), 936-946, 2017 | 244 | 2017 |
| Balance trees reveal microbial niche differentiation JT Morton, J Sanders, RA Quinn, D McDonald, A Gonzalez, ... MSystems 2 (1), e00162-16, 2017 | 235 | 2017 |
| Lower airway dysbiosis affects lung cancer progression JCJ Tsay, BG Wu, I Sulaiman, K Gershner, R Schluger, Y Li, TA Yie, ... Cancer discovery 11 (2), 293-307, 2021 | 210 | 2021 |
| Greengenes2 unifies microbial data in a single reference tree D McDonald, Y Jiang, M Balaban, K Cantrell, Q Zhu, A Gonzalez, ... Nature biotechnology 42 (5), 715-718, 2024 | 164 | 2024 |
Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDVerified email at ucsd.edu
