Romain Studer

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Christine OrengoProfessor of Bioinformatics, University College LondonVerified email at biochem.ucl.ac.uk
Marc Robinson-RechaviProfessor of Bioinformatics, Department of Ecology and Evolution UNIL, & Group leader SIBVerified email at unil.ch
Natalie L DawsonUniversity College LondonVerified email at ucl.ac.uk
Jonathan LeesUniversity of BristolVerified email at bristol.ac.uk
Janet M ThorntonSenior Scientist, European Molecular Biology Laboratory - European Institute of Bioinformatics (EMBLVerified email at ebi.ac.uk
Benoit DessaillyPost-Doctoral Fellow, National Institute of Biomedical Innovation, Osaka, JapanVerified email at nibio.go.jp
Sayoni DasPrecisionLife Ltd.Verified email at precisionlife.com
Nicholas FurnhamLondon School of Hygiene and Tropical MedicineVerified email at cryst.bioc.cam.ac.uk
Michael E. BakerResearch Professor, University of California, San DiegoVerified email at ucsd.edu
Robert RentzschInstitut für Innovation und Technik (iit)Verified email at iit-berlin.de
Corin YeatsCentre for Genomic Pathogen Surveillance, BDI, OxfordVerified email at bdi.ox.ac.uk
Pedro BeltraoAssociate Professor, ETH ZurichVerified email at ethz.ch
Roman A LaskowskiEuropean Bioinformatics Institute (EBI)Verified email at ebi.ac.uk
Paul AshfordResearch Associate in Bioinformatics, University College LondonVerified email at mail.cryst.bbk.ac.uk
Sonja LehtinenETH ZurichVerified email at env.ethz.ch
Nicolas SalaminDepartment of Computational Biology, University of LausanneVerified email at unil.ch
Christophe DessimozProfessor at UNIL and Director of SIB Swiss Institute of BioinformaticsVerified email at unil.ch
Adrian AltenhoffETH ZurichVerified email at inf.ethz.ch
Mark A. WilliamsInstitute of Structural and Molecular Biology, Birkbeck, University of LondonVerified email at bbk.ac.uk
Yannick WurmQueen Mary University of London & Alan Turing InstituteVerified email at qmul.ac.uk

Romain Studer

BenevolentAI

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Bioinformatics Computational Biology Evolution Protein Structure


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CATH: comprehensive structural and functional annotations for genome sequences I Sillitoe, TE Lewis, A Cuff, S Das, P Ashford, NL Dawson, N Furnham, ... Nucleic acids research 43 (D1), D376-D381, 2015	494	2015
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures I Sillitoe, AL Cuff, BH Dessailly, NL Dawson, N Furnham, D Lee, JG Lees, ... Nucleic Acids Research 41 (D1), D490-D498, 2013	278	2013
Resolving the Ortholog Conjecture: Orthologs Tend to Be Weakly, but Significantly, More Similar in Function than Paralogs AM Altenhoff, RA Studer, M Robinson-Rechavi, C Dessimoz PLoS Computational Biology 8 (5), e1002514, 2012	268	2012
Epithelial Sodium Transport and its control by aldosterone: The Story of our Internal Environment revisited BC Rossier, ME Baker, RA Studer Physiological Reviews 95 (1), 297-340, 2015	256	2015
Residue mutations and their impact on protein structure and function: detecting beneficial and pathogenic changes RA Studer, BH Dessailly, CA Orengo Biochemical Journal 449 (3), 581-594, 2013	248	2013
How confident can we be that orthologs are similar, but paralogs differ? RA Studer, M Robinson-Rechavi Trends in Genetics 25 (5), 210-216, 2009	197	2009
Stability-activity tradeoffs constrain the adaptive evolution of RubisCO RA Studer, PA Christin, MA Williams, CA Orengo Proceedings of the National Academy of Sciences, 201310811, 2014	177	2014
Vitellogenin underwent subfunctionalization to acquire caste and behavioral specific expression in the harvester ant Pogonomyrmex barbatus M Corona, R Libbrecht, Y Wurm, O Riba-Grognuz, RA Studer, L Keller PLoS Genet 9 (8), e1003730, 2013	122	2013
Origin of the response to adrenal and sex steroids: Roles of promiscuity and co-evolution of enzymes and steroid receptors ME Baker, DR Nelson, RA Studer The Journal of steroid biochemistry and molecular biology 151, 12-24, 2015	98	2015
Evolution of protein phosphorylation across 18 fungal species RA Studer, RA Rodriguez-Mias, KM Haas, JI Hsu, C Viéitez, C Solé, ... Science 354 (6309), 229-232, 2016	97	2016
Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes RA Studer, S Penel, L Duret, M Robinson-Rechavi Genome research 18 (9), 1393-1402, 2008	88	2008
Adaptive divergence of ancient gene duplicates in the avian MHC class II β R Burri, N Salamin, RA Studer, A Roulin, L Fumagalli Molecular biology and evolution 27 (10), 2360-2374, 2010	85	2010
Selectome update: quality control and computational improvements to a database of positive selection S Moretti, B Laurenczy, WH Gharib, B Castella, A Kuzniar, H Schabauer, ... Nucleic acids research 42 (D1), D917-D921, 2014	76	2014
Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis JG Lees, D Lee, RA Studer, NL Dawson, I Sillitoe, S Das, C Yeats, ... Nucleic acids research 42 (D1), D240-D245, 2014	67	2014
Selectome: a database of positive selection E Proux, RA Studer, S Moretti, M Robinson-Rechavi Nucleic acids research 37 (suppl 1), D404-D407, 2009	53	2009
Evolution of the epithelial sodium channel and the sodium pump as limiting factors of aldosterone action on sodium transport RA Studer, E Person, M Robinson-Rechavi, BC Rossier Physiological Genomics 43 (13), 844-854, 2011	51	2011
Conserved phosphorylation hotspots in eukaryotic protein domain families MJ Strumillo, M Oplova, C Vieitez, D Ochoa, M Shahraz, BP Busby, ... bioRxiv, 391185, 2018	50	2018
Structural and evolutionary innovation of the heterodimerization interface between USP and the ecdysone receptor ECR in insects T Iwema, A Chaumot, RA Studer, M Robinson-Rechavi, IML Billas, ... Molecular biology and evolution 26 (4), 753-768, 2009	50	2009
Collembolan Transcriptomes Highlight Molecular Evolution of Hexapods and Provide Clues on the Adaptation to Terrestrial Life A Faddeeva, RA Studer, K Kraaijeveld, D Sie, B Ylstra, J Mariën, ... PloS one 10 (6), e0130600, 2015	33	2015
iProteinDB: an integrative database of Drosophila post-translational modifications Y Hu, R Sopko, V Chung, RA Studer, SD Landry, D Liu, L Rabinow, ... bioRxiv, 386268, 2018	31	2018

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