Bo Li
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TIMER: a web server for comprehensive analysis of tumor-infiltrating immune cells
T Li, J Fan, B Wang, N Traugh, Q Chen, JS Liu, B Li, XS Liu
Cancer research 77 (21), e108-e110, 2017
Signatures of T cell dysfunction and exclusion predict cancer immunotherapy response
P Jiang, S Gu, D Pan, J Fu, A Sahu, X Hu, Z Li, N Traugh, X Bu, B Li, J Liu, ...
Nature medicine 24 (10), 1550-1558, 2018
TIMER2. 0 for analysis of tumor-infiltrating immune cells
T Li, J Fu, Z Zeng, D Cohen, J Li, Q Chen, B Li, XS Liu
Nucleic acids research 48 (W1), W509-W514, 2020
Comprehensive analyses of tumor immunity: implications for cancer immunotherapy
B Li, E Severson, JC Pignon, H Zhao, T Li, J Novak, P Jiang, H Shen, ...
Genome biology 17, 1-16, 2016
Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection
CM Theriot, MJ Koenigsknecht, PE Carlson Jr, GE Hatton, AM Nelson, ...
Nature communications 5 (1), 3114, 2014
Resistance to checkpoint blockade therapy through inactivation of antigen presentation
M Sade-Feldman, YJ Jiao, JH Chen, MS Rooney, M Barzily-Rokni, ...
Nature communications 8 (1), 1136, 2017
A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors
M Slyper, CBM Porter, O Ashenberg, J Waldman, E Drokhlyansky, ...
Nature medicine 26 (5), 792-802, 2020
Landscape of tumor-infiltrating T cell repertoire of human cancers
B Li, T Li, JC Pignon, B Wang, J Wang, SA Shukla, R Dou, Q Chen, ...
Nature genetics 48 (7), 725-732, 2016
Integrated genomic sequencing reveals mutational landscape of T-cell prolymphocytic leukemia
MJ Kiel, T Velusamy, D Rolland, AA Sahasrabuddhe, F Chung, NG Bailey, ...
Blood, The Journal of the American Society of Hematology 124 (9), 1460-1472, 2014
Defining T cell states associated with response to checkpoint immunotherapy in melanoma
M Sade-Feldman, K Yizhak, SL Bjorgaard, JP Ray, CG de Boer, ...
Cell 176 (1), 404, 2019
DNA sensing in mismatch repair-deficient tumor cells is essential for anti-tumor immunity
C Lu, J Guan, S Lu, Q Jin, B Rousseau, T Lu, D Stephens, H Zhang, J Zhu, ...
Cancer cell 39 (1), 96-108. e6, 2021
VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis
MI Cornwell, M Vangala, L Taing, Z Herbert, J Köster, B Li, H Sun, T Li, ...
BMC bioinformatics 19, 1-14, 2018
Landscape of B cell immunity and related immune evasion in human cancers
X Hu, J Zhang, J Wang, J Fu, T Li, X Zheng, B Wang, S Gu, P Jiang, J Fan, ...
Nature genetics 51 (3), 560-567, 2019
Lactate increases stemness of CD8+ T cells to augment anti-tumor immunity
Q Feng, Z Liu, X Yu, T Huang, J Chen, J Wang, J Wilhelm, S Li, J Song, ...
Nature communications 13 (1), 4981, 2022
Cistrome cancer: a web resource for integrative gene regulation modeling in cancer
S Mei, CA Meyer, R Zheng, Q Qin, Q Wu, P Jiang, B Li, X Shi, B Wang, ...
Cancer research 77 (21), e19-e22, 2017
A peripheral immune signature of responsiveness to PD-1 blockade in patients with classical Hodgkin lymphoma
FZ Cader, X Hu, WL Goh, K Wienand, J Ouyang, E Mandato, R Redd, ...
Nature medicine 26 (9), 1468-1479, 2020
Investigation of antigen-specific T-cell receptor clusters in human cancers
H Zhang, L Liu, J Zhang, J Chen, J Ye, S Shukla, J Qiao, X Zhan, H Chen, ...
Clinical Cancer Research 26 (6), 1359-1371, 2020
A general framework for analyzing tumor subclonality using SNP array and DNA sequencing data
B Li, JZ Li
Genome biology 15, 1-23, 2014
A SARS-CoV-2 neutralizing antibody with extensive Spike binding coverage and modified for optimal therapeutic outcomes
Y Guo, L Huang, G Zhang, Y Yao, H Zhou, S Shen, B Shen, B Li, X Li, ...
Nature Communications 12 (1), 2623, 2021
Ultrasensitive detection of TCR hypervariable-region sequences in solid-tissue RNA–seq data
B Li, T Li, B Wang, R Dou, J Zhang, JS Liu, XS Liu
Nature genetics 49 (4), 482-483, 2017
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Articles 1–20