| A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood S Guindon, O Gascuel Systematic biology 52 (5), 696-704, 2003 | 19316 | 2003 |
| New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0 S Guindon, JF Dufayard, V Lefort, M Anisimova, W Hordijk, O Gascuel Systematic biology 59 (3), 307-321, 2010 | 18258 | 2010 |
| SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building M Gouy, S Guindon, O Gascuel Molecular biology and evolution 27 (2), 221-224, 2010 | 6353 | 2010 |
| PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses R Lanfear, B Calcott, SYW Ho, S Guindon Molecular biology and evolution 29 (6), 1695-1701, 2012 | 6175 | 2012 |
| Phylogeny. fr: robust phylogenetic analysis for the non-specialist A Dereeper, V Guignon, G Blanc, S Audic, S Buffet, F Chevenet, ... Nucleic acids research 36 (suppl_2), W465-W469, 2008 | 5601 | 2008 |
| PHYML Online—a web server for fast maximum likelihood-based phylogenetic inference S Guindon, F Lethiec, P Duroux, O Gascuel Nucleic acids research 33 (suppl_2), W557-W559, 2005 | 1662 | 2005 |
| Estimating maximum likelihood phylogenies with PhyML S Guindon, F Delsuc, JF Dufayard, O Gascuel Bioinformatics for DNA sequence analysis, 113-137, 2009 | 911 | 2009 |
| The influence of rate heterogeneity among sites on the time dependence of molecular rates J Soubrier, M Steel, MSY Lee, C Der Sarkissian, S Guindon, SYW Ho, ... Molecular biology and evolution 29 (11), 3345-3358, 2012 | 284 | 2012 |
| Genomics, biogeography, and the diversification of placental mammals DE Wildman, M Uddin, JC Opazo, G Liu, V Lefort, S Guindon, O Gascuel, ... Proceedings of the National Academy of Sciences 104 (36), 14395-14400, 2007 | 199 | 2007 |
| Modeling the site-specific variation of selection patterns along lineages S Guindon, AG Rodrigo, KA Dyer, JP Huelsenbeck Proceedings of the National Academy of Sciences 101 (35), 12957-12962, 2004 | 186 | 2004 |
| Viral quasi-species evolution during hepatitis Be antigen seroconversion SG Lim, Y Cheng, S Guindon, BL Seet, LY Lee, P Hu, S Wasser, FJ Peter, ... Gastroenterology 133 (3), 951-958, 2007 | 160 | 2007 |
| Evolution of plant MADS box transcription factors: evidence for shifts in selection associated with early angiosperm diversification and concerted gene duplications H Shan, L Zahn, S Guindon, PK Wall, H Kong, H Ma, CW Depamphilis, ... Molecular biology and evolution 26 (10), 2229-2244, 2009 | 97 | 2009 |
| PhyML: fast and accurate phylogeny reconstruction by maximum likelihood S Guindon, JF Dufayard, W Hordijk, V Lefort, O Gascuel Infection Genetics and Evolution 9 (3), 384-385, 2009 | 77 | 2009 |
| Modelling the variability of evolutionary processes O Gascuel, S Guindon Reconstructing evolution: new mathematical and computational advances. O …, 2007 | 70* | 2007 |
| Sampling bias and model choice in continuous phylogeography: Getting lost on a random walk A Kalkauskas, U Perron, Y Sun, N Goldman, G Baele, S Guindon, ... PLOS Computational Biology 17 (1), e1008561, 2021 | 67 | 2021 |
| Intragenomic base content variation is a potential source of biases when searching for horizontally transferred genes S Guindon, G Perriere Molecular biology and evolution 18 (9), 1838-1840, 2001 | 61 | 2001 |
| Bayesian estimation of divergence times from large sequence alignments S Guindon Molecular Biology and Evolution 27 (8), 1768-1781, 2010 | 55 | 2010 |
| Efficient biased estimation of evolutionary distances when substitution rates vary across sites S Guindon, O Gascuel Molecular biology and evolution 19 (4), 534-543, 2002 | 51 | 2002 |
| Performance of standard and stochastic branch-site models for detecting positive selection amongst coding sequences A Lu, S Guindon Molecular biology and evolution 31 (2), 484-495, 2013 | 50 | 2013 |
| How well can the exponential-growth coalescent approximate constant-rate birth–death population dynamics? T Stadler, TG Vaughan, A Gavryushkin, S Guindon, D Kühnert, ... Proceedings of the Royal Society B: Biological Sciences 282 (1806), 20150420, 2015 | 49 | 2015 |
Olivier GascuelCNRS & Muséum National d'Histoire NaturelleVerified email at mnhn.fr
