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Alejandro Rooney
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Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
J Chun, A Oren, A Ventosa, H Christensen, DR Arahal, MS da Costa, ...
International journal of systematic and evolutionary microbiology 68 (1 …, 2018
25582018
Concerted and birth-and-death evolution of multigene families
M Nei, AP Rooney
Annu. Rev. Genet. 39, 121-152, 2005
13782005
Fusarium Pathogenomics
LJ Ma, DM Geiser, RH Proctor, AP Rooney, K O'Donnell, F Trail, ...
Annual review of microbiology 67, 399-416, 2013
7432013
An adaptive evolutionary shift in Fusarium head blight pathogen populations is driving the rapid spread of more toxigenic Fusarium graminearum in North America
TJ Ward, RM Clear, AP Rooney, K O’Donnell, D Gaba, S Patrick, ...
Fungal Genetics and Biology 45 (4), 473-484, 2008
5922008
Phylogenetic relationships among cetartiodactyls based on insertions of short and long interpersed elements: hippopotamuses are the closest extant relatives of whales
M Nikaido, AP Rooney, N Okada
Proceedings of the National Academy of Sciences 96 (18), 10261-10266, 1999
5001999
Phylogenetic analyses of RPB1 and RPB2 support a middle Cretaceous origin for a clade comprising all agriculturally and medically important fusaria
K O’Donnell, AP Rooney, RH Proctor, DW Brown, SP McCormick, ...
Fungal Genetics and Biology 52, 20-31, 2013
4452013
Molecular evolution and phylogeny of elapid snake venom three-finger toxins
BG Fry, W Wüster, RM Kini, V Brusic, A Khan, D Venkataraman, ...
Journal of molecular evolution 57, 110-129, 2003
4102003
Evolution of moth sex pheromones via ancestral genes
WL Roelofs, W Liu, G Hao, H Jiao, AP Rooney, CE Linn Jr
Proceedings of the National Academy of Sciences 99 (21), 13621-13626, 2002
3972002
Identifying the fundamental units of bacterial diversity: a paradigm shift to incorporate ecology into bacterial systematics
A Koeppel, EB Perry, J Sikorski, D Krizanc, A Warner, DM Ward, ...
Proceedings of the National Academy of Sciences 105 (7), 2504-2509, 2008
3512008
Bacillus velezensis is not a later heterotypic synonym of Bacillus amyloliquefaciens; Bacillus methylotrophicus, Bacillus amyloliquefaciens subsp. plantarum and ‘Bacillus …
CA Dunlap, SJ Kim, SW Kwon, AP Rooney
International journal of systematic and evolutionary microbiology 66 (3 …, 2016
3342016
Phylogeny and molecular taxonomy of the Bacillus subtilis species complex and description of Bacillus subtilis subsp. inaquosorum subsp. nov.
AP Rooney, NPJ Price, C Ehrhardt, JL Swezey, JD Bannan
International journal of systematic and evolutionary microbiology 59 (10 …, 2009
3202009
One Fungus, One Name: Defining the Genus Fusarium in a Scientifically Robust Way That Preserves Longstanding Use
DM Geiser, T Aoki, CW Bacon, SE Baker, MK Bhattacharyya, ME Brandt, ...
Phytopathology 103 (5), 400-408, 2013
2912013
Molecular genetics and evolution of pheromone biosynthesis in Lepidoptera
WL Roelofs, AP Rooney
Proceedings of the National Academy of Sciences 100 (16), 9179-9184, 2003
2402003
Phylogenetic diversity of insecticolous fusaria inferred from multilocus DNA sequence data and their molecular identification via FUSARIUM-ID and Fusarium MLST
K O’Donnell, RA Humber, DM Geiser, S Kang, B Park, VARG Robert, ...
Mycologia 104 (2), 427-445, 2012
2272012
Evolution of a large ribosomal RNA multigene family in filamentous fungi: birth and death of a concerted evolution paradigm
AP Rooney, TJ Ward
Proceedings of the National Academy of Sciences 102 (14), 5084-5089, 2005
2122005
Phylogeny and historical biogeography of true morels (Morchella) reveals an early Cretaceous origin and high continental endemism and provincialism in the Holarctic
K O’Donnell, AP Rooney, GL Mills, M Kuo, NS Weber, SA Rehner
Fungal Genetics and Biology 48 (3), 252-265, 2011
1992011
Multigene molecular phylogenetics reveals true morels (Morchella) are especially species-rich in China
XH Du, Q Zhao, K O’Donnell, AP Rooney, ZL Yang
Fungal Genetics and Biology 49 (6), 455-469, 2012
1772012
Inferring species trees from gene trees: a phylogenetic analysis of the Elapidae (Serpentes) based on the amino acid sequences of venom proteins
JB Slowinski, A Knight, AP Rooney
Molecular phylogenetics and evolution 8 (3), 349-362, 1997
1731997
An inordinate fondness for Fusarium: phylogenetic diversity of fusaria cultivated by ambrosia beetles in the genus Euwallacea on avocado and other plant hosts
MT Kasson, K O’Donnell, AP Rooney, S Sink, RC Ploetz, JN Ploetz, ...
Fungal Genetics and Biology 56, 147-157, 2013
1702013
Purification and characterization of a family 5 endoglucanase from a moderately thermophilic strain of Bacillus licheniformis
KM Bischoff, AP Rooney, XL Li, S Liu, SR Hughes
Biotechnology Letters 28, 1761-1765, 2006
1672006
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