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Joseph Guhlin
Joseph Guhlin
Genomics Aotearoa / University of Otago
Verified email at umn.edu - Homepage
Title
Cited by
Cited by
Year
Population genomics of the critically endangered kākāpō
N Dussex, T Van Der Valk, HE Morales, CW Wheat, D Díez-del-Molino, ...
Cell Genomics 1 (1), 2021
1112021
Exploring structural variation and gene family architecture with De Novo assemblies of 15 Medicago genomes
P Zhou, KAT Silverstein, T Ramaraj, J Guhlin, R Denny, J Liu, AD Farmer, ...
BMC genomics 18 (1), 1-14, 2017
1102017
Detecting small plant peptides using SPADA (small peptide alignment discovery application)
P Zhou, KAT Silverstein, L Gao, JD Walton, S Nallu, J Guhlin, ND Young
BMC bioinformatics 14, 1-16, 2013
1012013
Select and resequence reveals relative fitness of bacteria in symbiotic and free-living environments
LT Burghardt, B Epstein, J Guhlin, MS Nelson, MR Taylor, ND Young, ...
Proceedings of the National Academy of Sciences 115 (10), 2425-2430, 2018
952018
Validating genome-wide association candidates controlling quantitative variation in nodulation
SJ Curtin, P Tiffin, J Guhlin, DI Trujillo, LT Burghardt, P Atkins, NJ Baltes, ...
Plant Physiology 173 (2), 921-931, 2017
772017
Transcriptomic basis of genome by genome variation in a legume‐rhizobia mutualism
LT Burghardt, J Guhlin, CL Chun, J Liu, MJ Sadowsky, RM Stupar, ...
Molecular ecology 26 (21), 6122-6135, 2017
532017
The potential for a CRISPR gene drive to eradicate or suppress globally invasive social wasps
PJ Lester, M Bulgarella, JW Baty, PK Dearden, J Guhlin, JM Kean
Scientific Reports 10 (1), 12398, 2020
312020
Genome-Wide Association Analyses in the Model Rhizobium Ensifer meliloti
B Epstein, RAI Abou-Shanab, A Shamseldin, MR Taylor, J Guhlin, ...
MSphere 3 (5), e00386-18, 2018
312018
Expanding the conservation genomics toolbox: Incorporating structural variants to enhance genomic studies for species of conservation concern
J Wold, KP Koepfli, SJ Galla, D Eccles, CJ Hogg, MF Le Lec, J Guhlin, ...
Molecular Ecology 30 (23), 5949-5965, 2021
272021
High-Quality Assemblies for Three Invasive Social Wasps from the Vespula Genus
TWR Harrop, J Guhlin, GM McLaughlin, E Permina, P Stockwell, J Gilligan, ...
G3: Genes, Genomes, Genetics 10 (10), 3479-3488, 2020
252020
Genomics reveals widespread ecological speciation in flightless insects
GA McCulloch, BJ Foster, L Dutoit, TWR Harrop, J Guhlin, PK Dearden, ...
Systematic Biology 70 (5), 863-876, 2021
242021
The complete replicons of 16 Ensifer meliloti strains offer insights into intra-and inter-replicon gene transfer, transposon-associated loci, and repeat elements
M Nelson, J Guhlin, B Epstein, P Tiffin, MJ Sadowsky
Microbial genomics 4 (5), 2018
222018
The Pacific Biosciences de novo assembled genome dataset from a parthenogenetic New Zealand wild population of the longhorned tick, Haemaphysalis longicornis Neumann, 1901
FD Guerrero, KG Bendele, N Ghaffari, J Guhlin, KR Gedye, KE Lawrence, ...
Data in brief 27, 104602, 2019
182019
ODG: Omics database generator-a tool for generating, querying, and analyzing multi-omics comparative databases to facilitate biological understanding
J Guhlin, KAT Silverstein, P Zhou, P Tiffin, ND Young
BMC bioinformatics 18, 1-8, 2017
152017
Species-wide genomics of kākāpō provides tools to accelerate recovery
J Guhlin, MF Le Lec, J Wold, E Koot, D Winter, PJ Biggs, SJ Galla, ...
Nature ecology & evolution 7 (10), 1693-1705, 2023
12*2023
An exploration of assembly strategies and quality metrics on the accuracy of the rewarewa (Knightia excelsa) genome
AM McCartney, E Hilario, SS Choi, J Guhlin, JM Prebble, G Houliston, ...
Molecular Ecology Resources 21 (6), 2125-2144, 2021
8*2021
Genomic signatures of parallel alpine adaptation in recently evolved flightless insects
GA McCulloch, J Guhlin, L Dutoit, TWR Harrop, PK Dearden, JM Waters
Molecular Ecology 30 (24), 6677-6686, 2021
62021
Galba: genome annotation with miniprot and AUGUSTUS
T Brůna, H Li, J Guhlin, D Honsel, S Herbold, M Stanke, N Nenasheva, ...
BMC bioinformatics 24 (1), 327, 2023
52023
The promise and challenges of characterizing genome‐wide structural variants: A case study in a critically endangered parrot
JR Wold, JG Guhlin, PK Dearden, AW Santure, TE Steeves
Molecular Ecology Resources, 2023
52023
Expanding the conservation genomics toolbox: incorporating structural variants to enhance functional studies for species of conservation concern
J Wold, S Galla, D Eccles, CJ Hogg, K Koepfli, ML Lec, J Guhlin, K Price, ...
42021
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Articles 1–20