Pär Engström
Pär Engström
Science for Life Laboratory, Stockholm University
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The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
Science 309 (5740), 1559, 2005
JASPAR: an open‐access database for eukaryotic transcription factor binding profiles
A Sandelin, W Alkema, P Engström, WW Wasserman, B Lenhard
Nucleic acids research 32 (suppl 1), D91-D94, 2004
Antisense transcription in the mammalian transcriptome
S Katayama, Y Tomaru, T Kasukawa, K Waki, M Nakanishi, M Nakamura, ...
Science 309 (5740), 1564, 2005
Genome-wide analysis of mammalian promoter architecture and evolution
P Carninci, A Sandelin, B Lenhard, S Katayama, K Shimokawa, ...
Nature genetics 38 (6), 626-635, 2006
Assessment of transcript reconstruction methods for RNA-seq
T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ...
Nature methods 10 (12), 1177-1184, 2013
Systematic evaluation of spliced alignment programs for RNA-seq data
PG Engström, T Steijger, B Sipos, GR Grant, A Kahles, G Rätsch, ...
Nature methods 10 (12), 1185-1191, 2013
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
H Suzuki, ARR Forrest, E van Nimwegen, CO Daub, PJ Balwierz, ...
Nature genetics 41 (5), 553-562, 2009
Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates
H Kikuta, M Laplante, P Navratilova, AZ Komisarczuk, PG Engström, ...
Genome research 17 (5), 545-555, 2007
Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes
A Sandelin, P Bailey, S Bruce, P Engström, J Klos, W Wasserman, ...
BMC genomics 5 (1), 99, 2004
Identification of conserved regulatory elements by comparative genome analysis
B Lenhard, A Sandelin, L Mendoza, P Engström, N Jareborg, ...
Journal of Biology 2 (2), 13, 2003
Complex loci in human and mouse genomes
PG Engström, H Suzuki, N Ninomiya, A Akalin, L Sessa, G Lavorgna, ...
PLoS Genet 2 (4), e47, 2006
Long-range gene regulation links genomic type 2 diabetes and obesity risk regions to HHEX, SOX4, and IRX3
A Ragvin, E Moro, D Fredman, P Navratilova, Ø Drivenes, PG Engström, ...
Proceedings of the National Academy of Sciences 107 (2), 775-780, 2010
Genomic regulatory blocks underlie extensive microsynteny conservation in insects
PG Engström, SJH Sui, Ø Drivenes, TS Becker, B Lenhard
Genome research 17 (12), 1898-1908, 2007
RNAdb 2.0—an expanded database of mammalian non-coding RNAs
KC Pang, S Stephen, ME Dinger, PG Engström, B Lenhard, JS Mattick
Nucleic acids research 35 (suppl 1), D178-D182, 2007
Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs
N Maeda, T Kasukawa, R Oyama, J Gough, M Frith, PG Engström, ...
PLoS Genetics 2 (4), e62, 2006
RNAdb—a comprehensive mammalian noncoding RNA database
KC Pang, S Stephen, PG Engström, K Tajul-Arifin, W Chen, C Wahlestedt, ...
Nucleic acids research 33 (suppl 1), D125-D130, 2005
Widespread resetting of DNA methylation in glioblastoma-initiating cells suppresses malignant cellular behavior in a lineage-dependent manner
SH Stricker, A Feber, PG Engström, H Carén, KM Kurian, Y Takashima, ...
Genes & Development 27 (6), 654-669, 2013
Current chemotherapy protocols for childhood acute lymphoblastic leukemia induce loss of humoral immunity to viral vaccination antigens
A Nilsson, A De Milito, P Engström, M Nordin, M Narita, L Grillner, ...
Pediatrics 109 (6), e91, 2002
In silico detection of sequence variations modifying transcriptional regulation
MC Andersen, PG Engström, S Lithwick, D Arenillas, P Eriksson, ...
PLoS computational biology 4 (1), e5, 2008
Ancora: a web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes
PG Engström, D Fredman, B Lenhard
Genome biology 9 (2), R34, 2008
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