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Andrew Thrasher
Andrew Thrasher
Staff Software Engineer at St. Jude Children's Research Hospital
Verified email at stjude.org
Title
Cited by
Cited by
Year
VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics
K Megy, SJ Emrich, D Lawson, D Campbell, E Dialynas, DST Hughes, ...
Nucleic Acids Research, 2011
1942011
Clinical cancer genomic profiling by three-platform sequencing of whole genome, whole exome and transcriptome
M Rusch, J Nakitandwe, S Shurtleff, S Newman, Z Zhang, MN Edmonson, ...
Nature communications 9 (1), 3962, 2018
1772018
St. Jude Cloud: a pediatric cancer genomic data-sharing ecosystem
C McLeod, AM Gout, X Zhou, A Thrasher, D Rahbarinia, SW Brady, ...
Cancer discovery 11 (5), 1082-1099, 2021
1382021
Genomes for kids: the scope of pathogenic mutations in pediatric cancer revealed by comprehensive DNA and RNA sequencing
S Newman, J Nakitandwe, CA Kesserwan, EM Azzato, DA Wheeler, ...
Cancer discovery 11 (12), 3008-3027, 2021
1352021
Genetic risk for subsequent neoplasms among long-term survivors of childhood cancer
Z Wang, CL Wilson, J Easton, A Thrasher, H Mulder, Q Liu, DJ Hedges, ...
Journal of Clinical Oncology 36 (20), 2078-2087, 2018
1332018
CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data
L Tian, Y Li, MN Edmonson, X Zhou, S Newman, C McLeod, A Thrasher, ...
Genome biology 21, 1-18, 2020
832020
Harnessing parallelism in multicore clusters with the all-pairs, wavefront, and makeflow abstractions
L Yu, C Moretti, A Thrasher, S Emrich, K Judd, D Thain
Cluster Computing 13, 243-256, 2010
652010
A framework for scalable genome assembly on clusters, clouds, and grids
C Moretti, A Thrasher, L Yu, M Olson, S Emrich, D Thain
IEEE Transactions on Parallel and Distributed Systems 23 (12), 2189-2197, 2012
302012
Taming complex bioinformatics workflows with Weaver, Makeflow, and Starch
A Thrasher, R Carmichael, P Bui, L Yu, D Thain, S Emrich
The 5th Workshop on Workflows in Support of Large-Scale Science, 1-6, 2010
212010
A polygenic score for acute vaso-occlusive pain in pediatric sickle cell disease
E Rampersaud, G Kang, LE Palmer, SR Rashkin, S Wang, W Bi, ...
Blood Advances 5 (14), 2839-2851, 2021
162021
Scaling up genome annotation using MAKER and work queue
A Thrasher, Z Musgrave, B Kachmarck, D Thain, S Emrich
International Journal of Bioinformatics Research and Applications 2 10 (4-5 …, 2014
152014
MethylationToActivity: a deep-learning framework that reveals promoter activity landscapes from DNA methylomes in individual tumors
J Williams, B Xu, D Putnam, A Thrasher, C Li, J Yang, X Chen
Genome biology 22, 1-27, 2021
102021
Scripting distributed scientific workflows using Weaver
P Bui, L Yu, A Thrasher, R Carmichael, I Lanc, P Donnelly, D Thain
Concurrency and Computation: Practice and Experience 24 (15), 1685-1707, 2012
102012
Case Studies in Designing Elastic Applications
D Rajan, A Thrasher, JAI Badi’Abdul-Wahid, S Emrich, D Thain
CCGrid2013 the 13th IEEE/ACM International Symposium on Cluster, Cloud and …, 2013
92013
St. Jude Cloud: a pediatric cancer genomic data-sharing ecosystem. Cancer Discov. 2021; 11: 1082–1099. doi: 10.1158/2159-8290
C McLeod, AM Gout, X Zhou, A Thrasher, D Rahbarinia, SW Brady, ...
CD-20-1230.[Europe PMC free article][Abstract][CrossRef][Google Scholar], 0
9
Jude cloud: a pediatric cancer genomic Data-Sharing ecosystem. Cancer Discov 2021; 11: 1082–99. doi: 10.1158/2159-8290
C McLeod, AM Gout, X Zhou, A Thrasher, D Rahbarinia, SW Brady, ...
CD-20-1230, 0
7
NetBID2 provides comprehensive hidden driver analysis
X Dong, L Ding, A Thrasher, X Wang, J Liu, Q Pan, J Rash, Y Dhungana, ...
Nature Communications 14 (1), 2581, 2023
62023
Shifting the Bioinformatics Computing Paradigm: A Case Study using Genome
A Thrasher, Z Musgrave, D Thain, S Emrich
Computational Advances in Bio and Medical Sciences (ICCABS), 2012 IEEE 2nd …, 2012
6*2012
Shifting the Bioinformatics Computing Paradigm: A Case Study in Parallelizing Genome Annotation Using MAKER and Work Queue
A Thrasher, Z Musgrave, D Thain, S Emrich
International Conference on Computational Advances in Bio and Medical …, 2012
62012
Cancer germline predisposing variants and late mortality from subsequent malignant neoplasms among long-term childhood cancer survivors: a report from the St Jude Lifetime …
C Chen, N Qin, M Wang, Q Dong, SS Tithi, Y Hui, W Chen, G Wu, ...
The Lancet Oncology 24 (10), 1147-1156, 2023
52023
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