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Pavel Baranov, "Pasha"
Pavel Baranov, "Pasha"
Professor of Biomolecular Informatics, University College Cork, Ireland
Verified email at ucc.ie - Homepage
Title
Cited by
Cited by
Year
Translation of 5′ leaders is pervasive in genes resistant to eIF2 repression
DE Andreev, PBF O'Connor, C Fahey, EM Kenny, IM Terenin, SE Dmitriev, ...
elife 4, e03971, 2015
3582015
Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use
JF Atkins, G Loughran, PR Bhatt, AE Firth, PV Baranov
Nucleic acids research 44 (15), 7007-7078, 2016
3082016
Programmed ribosomal frameshifting in decoding the SARS-CoV genome
PV Baranov, CM Henderson, CB Anderson, RF Gesteland, JF Atkins, ...
Virology 332 (2), 498-510, 2005
2742005
Recoding: translational bifurcations in gene expression
PV Baranov, RF Gesteland, JF Atkins
Gene 286 (2), 187-201, 2002
2642002
DARNED: a DAtabase of RNa EDiting in humans
A Kiran, PV Baranov
Bioinformatics 26 (14), 1772-1776, 2010
2582010
Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences
IP Ivanov, AE Firth, AM Michel, JF Atkins, PV Baranov
Nucleic acids research 39 (10), 4220-4234, 2011
2452011
Evidence of efficient stop codon readthrough in four mammalian genes
G Loughran, MY Chou, IP Ivanov, I Jungreis, M Kellis, AM Kiran, ...
Nucleic acids research 42 (14), 8928-8938, 2014
2332014
GWIPS-viz: development of a ribo-seq genome browser
AM Michel, G Fox, A M. Kiran, C De Bo, PBF O’Connor, SM Heaphy, ...
Nucleic acids research 42 (D1), D859-D864, 2014
2302014
Observation of dually decoded regions of the human genome using ribosome profiling data
AM Michel, KR Choudhury, AE Firth, NT Ingolia, JF Atkins, PV Baranov
Genome research 22 (11), 2219-2229, 2012
2242012
Pyrrolysine and selenocysteine use dissimilar decoding strategies
Y Zhang, PV Baranov, JF Atkins, VN Gladyshev
Journal of Biological Chemistry 280 (21), 20740-20751, 2005
1682005
Insights into the mechanisms of eukaryotic translation gained with ribosome profiling
DE Andreev, PBF O'Connor, G Loughran, SE Dmitriev, PV Baranov, ...
Nucleic acids research 45 (2), 513-526, 2017
1612017
Retapamulin-assisted ribosome profiling reveals the alternative bacterial proteome
S Meydan, J Marks, D Klepacki, V Sharma, PV Baranov, AE Firth, ...
Molecular cell 74 (3), 481-493. e6, 2019
1442019
Oxygen and glucose deprivation induces widespread alterations in mRNA translation within 20 minutes
DE Andreev, PBF O’Connor, AV Zhdanov, RI Dmitriev, IN Shatsky, ...
Genome biology 16, 1-14, 2015
1392015
Comparative survey of the relative impact of mRNA features on local ribosome profiling read density
PBF O’Connor, DE Andreev, PV Baranov
Nature communications 7 (1), 12915, 2016
1252016
The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 Ň resolution
F Mueller, I Sommer, P Baranov, R Matadeen, M Stoldt, J Wo»hnert, ...
Journal of molecular biology 298 (1), 35-59, 2000
1182000
Release factor 2 frameshifting sites in different bacteria
PV Baranov, RF Gesteland, JF Atkins
EMBO reports, 2002
1122002
P-site tRNA is a crucial initiator of ribosomal frameshifting
PV Baranov, RF Gesteland, JF Atkins
Rna 10 (2), 221-230, 2004
1112004
Ribosome profiling: a Hi‐Def monitor for protein synthesis at the genome‐wide scale
AM Michel, PV Baranov
Wiley Interdisciplinary Reviews: RNA 4 (5), 473-490, 2013
1102013
Darned in 2013: inclusion of model organisms and linking with Wikipedia
AM Kiran, JJ O'Mahony, K Sanjeev, PV Baranov
Nucleic acids research 41 (D1), D258-D261, 2012
1072012
Novel Ciliate Genetic Code Variants Including the Reassignment of All Three Stop Codons to Sense Codons in Condylostoma magnum
SM Heaphy, M Mariotti, VN Gladyshev, JF Atkins, PV Baranov
Molecular biology and evolution 33 (11), 2885-2889, 2016
1062016
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