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Daniel Portik
Daniel Portik
Staff Bioinformatics Scientist, PacBio
Verified email at pacificbiosciences.com - Homepage
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Cited by
Cited by
Year
Evaluating mechanisms of diversification in a Guineo‐Congolian tropical forest frog using demographic model selection
DM Portik, AD Leaché, D Rivera, MF Barej, M Burger, M Hirschfeld, ...
Molecular ecology 26 (19), 5245-5263, 2017
1952017
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities
DM Bickhart, M Kolmogorov, E Tseng, DM Portik, A Korobeynikov, ...
Nature biotechnology 40 (5), 711-719, 2022
132*2022
Cryptic diversity of a widespread global pathogen reveals expanded threats to amphibian conservation
AQ Byrne, VT Vredenburg, A Martel, F Pasmans, RC Bell, DC Blackburn, ...
Proceedings of the National Academy of Sciences 116 (41), 20382-20387, 2019
1172019
An evaluation of transcriptome‐based exon capture for frog phylogenomics across multiple scales of divergence (Class: Amphibia, Order: Anura)
DM Portik, LL Smith, K Bi
Molecular ecology resources 16 (5), 1069-1083, 2016
1042016
Genetics, Morphology, Advertisement Calls, and Historical Records Distinguish Six New Polyploid Species of African Clawed Frog (Xenopus, Pipidae) from West …
BJ Evans, TF Carter, E Greenbaum, V Gvoždík, DB Kelley, PJ McLaughlin, ...
PloS one 10 (12), e0142823, 2015
1022015
Identification of 104 rapidly-evolving nuclear protein-coding markers for amplification across scaled reptiles using genomic resources
DM Portik, PL Wood, JL Grismer, EL Stanley, TR Jackman
Conservation Genetics Resources, 1-10, 2012
842012
Metagenome assembly of high-fidelity long reads with hifiasm-meta
X Feng, H Cheng, D Portik, H Li
Nature methods 19 (6), 671-674, 2022
822022
Sexual dichromatism drives diversification within a major radiation of African amphibians
DM Portik, RC Bell, DC Blackburn, AM Bauer, CD Barratt, WR Branch, ...
Systematic Biology 68 (6), 859-875, 2019
622019
Diversity and biogeography of frogs in the genus Amnirana (Anura: Ranidae) across sub-Saharan Africa
GFM Jongsma, MF Barej, CD Barratt, M Burger, W Conradie, R Ernst, ...
Molecular phylogenetics and evolution 120, 274-285, 2018
572018
Idiosyncratic responses to climate‐driven forest fragmentation and marine incursions in reed frogs from Central Africa and the Gulf of Guinea Islands
RC Bell, JL Parra, G Badjedjea, MF Barej, DC Blackburn, M Burger, ...
Molecular Ecology 26 (19), 5223-5244, 2017
572017
Historical biogeography resolves the origins of endemic Arabian toad lineages (Anura: Bufonidae): Evidence for ancient vicariance and dispersal events with the Horn of Africa …
DM Portik, TJ Papenfuss
BMC Evolutionary Biology 15, 1-19, 2015
572015
Vanishing refuge? Testing the forest refuge hypothesis in coastal East Africa using genome‐wide sequence data for seven amphibians
CD Barratt, BA Bwong, R Jehle, HC Liedtke, P Nagel, RE Onstein, ...
Molecular Ecology 27 (21), 4289-4308, 2018
542018
The evolution of reproductive diversity in Afrobatrachia: a phylogenetic comparative analysis of an extensive radiation of African frogs
DM Portik, DC Blackburn
Evolution 70 (9), 2017-2032, 2016
522016
Molecular phylogeny of Panaspis and Afroablepharus skinks (Squamata: Scincidae) in the savannas of sub-Saharan Africa
MF Medina, AM Bauer, WR Branch, A Schmitz, W Conradie, ZT Nagy, ...
Molecular Phylogenetics and Evolution 100, 409-423, 2016
522016
Bridging the gap: western rock skinks (Trachylepis sulcata) have a short history in South Africa
DM Portik, AM Bauer, TR Jackman
Molecular Ecology 20 (8), 1744-1758, 2011
512011
A new species of Lygodactylus (Squamata: Gekkonidae) endemic to Mount Namuli, an isolated ‘sky island’of northern Mozambique
DM Portik, SL Travers, AM Bauer, WR Branch
Zootaxa 3710 (5), 415-435, 2013
502013
West Africa-A Safe Haven for Frogs? A Sub-Continental Assessment of the Chytrid Fungus (Batrachochytrium dendrobatidis)
J Penner, GB Adum, MT McElroy, T Doherty-Bone, M Hirschfeld, ...
PLOS ONE 8 (2), e56236, 2013
502013
Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets
DM Portik, CT Brown, NT Pierce-Ward
BMC bioinformatics 23 (1), 541, 2022
492022
Monitors cross the Red Sea: The biogeographic history of Varanus yemenensis
DM Portik, TJ Papenfuss
Molecular Phylogenetics and Evolution, 2012
482012
Sky, sea, and forest islands: Diversification in the African leaf‐folding frog Afrixalus paradorsalis (Anura: Hyperoliidae) of the Lower Guineo‐Congolian rain forest
KL Charles, RC Bell, DC Blackburn, M Burger, MK Fujita, V Gvoždík, ...
Journal of Biogeography 45 (8), 1781-1794, 2018
452018
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