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David Aanensen
David Aanensen
Professor at Big Data Institute, University of Oxford
Verified email at bdi.ox.ac.uk
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Cited by
Cited by
Year
eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
EJ Feil, BC Li, DM Aanensen, WP Hanage, BG Spratt
Journal of bacteriology 186 (5), 1518-1530, 2004
22092004
Evaluating the effects of SARS-CoV-2 spike mutation D614G on transmissibility and pathogenicity
E Volz, V Hill, JT McCrone, A Price, D Jorgensen, Á O’Toole, J Southgate, ...
Cell 184 (1), 64-75. e11, 2021
10782021
Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool
Á O’Toole, E Scher, A Underwood, B Jackson, V Hill, JT McCrone, ...
Virus evolution 7 (2), veab064, 2021
8902021
Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes
SD Bentley, DM Aanensen, A Mavroidi, D Saunders, E Rabbinowitsch, ...
PLoS genetics 2 (3), e31, 2006
8732006
Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B. 1.617. 2) compared with alpha (B. 1.1. 7) variants of concern: a cohort study
KA Twohig, T Nyberg, A Zaidi, S Thelwall, MA Sinnathamby, S Aliabadi, ...
The Lancet Infectious Diseases 22 (1), 35-42, 2022
8232022
Geographic Distribution of Staphylococcus aureus Causing Invasive Infections in Europe: A Molecular-Epidemiological Analysis
H Grundmann, DM Aanensen, CC Van Den Wijngaard, BG Spratt, ...
PLoS medicine 7 (1), e1000215, 2010
6622010
Occurrence of carbapenemase-producing Klebsiella pneumoniae and Escherichia coli in the European survey of carbapenemase-producing Enterobacteriaceae (EuSCAPE): a prospective …
H Grundmann, C Glasner, B Albiger, DM Aanensen, CT Tomlinson, ...
The Lancet infectious diseases 17 (2), 153-163, 2017
6412017
Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei
D Godoy, G Randle, AJ Simpson, DM Aanensen, TL Pitt, R Kinoshita, ...
Journal of clinical microbiology 41 (5), 2068-2079, 2003
6222003
Microreact: visualizing and sharing data for genomic epidemiology and phylogeography
S Argimón, K Abudahab, RJE Goater, A Fedosejev, J Bhai, C Glasner, ...
Microbial genomics 2 (11), e000093, 2016
6102016
Hierarchical and spatially explicit clustering of DNA sequences with BAPS software
L Cheng, TR Connor, J Sirén, DM Aanensen, J Corander
Molecular biology and evolution 30 (5), 1224-1228, 2013
6062013
Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread
S David, S Reuter, SR Harris, C Glasner, T Feltwell, S Argimon, ...
Nature microbiology 4 (11), 1919-1929, 2019
5632019
Recent Asian origin of chytrid fungi causing global amphibian declines
SJ O’hanlon, A Rieux, RA Farrer, GM Rosa, B Waldman, A Bataille, ...
Science 360 (6389), 621-627, 2018
5552018
Consensus multi-locus sequence typing scheme for Cryptococcus neoformans and Cryptococcus gattii
W Meyer, DM Aanensen, T Boekhout, M Cogliati, MR Diaz, MC Esposto, ...
Medical mycology 47 (6), 561-570, 2009
5482009
Phandango: an interactive viewer for bacterial population genomics
J Hadfield, NJ Croucher, RJ Goater, K Abudahab, DM Aanensen, ...
Bioinformatics 34 (2), 292-293, 2018
5242018
A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic
MTG Holden, LY Hsu, K Kurt, LA Weinert, AE Mather, SR Harris, ...
Genome research 23 (4), 653-664, 2013
5152013
EpiCollect: linking smartphones to web applications for epidemiology, ecology and community data collection
DM Aanensen, DM Huntley, EJ Feil, F al-Own, BG Spratt
PloS one 4 (9), e6968, 2009
5062009
Mapping the Global Emergence of Batrachochytrium dendrobatidis, the Amphibian Chytrid Fungus
DH Olson, DM Aanensen, KL Ronnenberg, CI Powell, SF Walker, J Bielby, ...
PloS one 8 (2), e56802, 2013
4842013
Rapid sequence-based identification of gonococcal transmission clusters in a large metropolitan area
IMC Martin, CA Ison, DM Aanensen, KA Fenton, BG Spratt
The Journal of infectious diseases 189 (8), 1497-1505, 2004
4462004
Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B. 1.1. 7
B Meng, SA Kemp, G Papa, R Datir, IATM Ferreira, S Marelli, WT Harvey, ...
Cell reports 35 (13), 2021
4332021
Dense genomic sampling identifies highways of pneumococcal recombination
C Chewapreecha, SR Harris, NJ Croucher, C Turner, P Marttinen, ...
Nature genetics 46 (3), 305-309, 2014
4002014
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